Sing-Hoi Sze
Department of Computer Science,
Department of Biochemistry & Biophysics,
Texas A&M University,
College Station, TX 77843.
Office: HRBB 328B
Phone: (979)845-5009
Email: shsze@cs.tamu.edu
Research
Our work focuses on the application of computational techniques to solve
problems in biology. Current research projects
cover diverse areas in computational biology, including multiple sequence
alignment, motif finding with applications to predicting transcription factor
binding sites, biological network analysis, and identification of gene clusters
within genomes.
Software
- GCQuery - Finding related gene clusters on a given
genome from a given query cluster
- ISPAlign - Intermediate sequence profile alignment
- MotifEnumerator - Improved pattern-driven
algorithms for motif finding in DNA sequences
- PathMatch and GraphMatch
- Path matching and graph matching in biological networks
- PSAlign - Preserving multiple sequence alignment
- SSFold - Predicting protein folding pathways at the
mesosopic level based on native interactions between secondary structure
elements
Courses