Sing-Hoi Sze
Department of Computer Science and Engineering,
Department of Biochemistry & Biophysics,
Texas A&M University,
College Station, TX 77843.
Office: HRBB 328B
Phone: (979)845-5009
Email: shsze@cse.tamu.edu
Research
Our work focuses on the application of computational techniques to solve
problems in biology. Current research projects
cover diverse areas in computational biology, including multiple sequence
alignment, motif finding with applications to predicting transcription factor
binding sites, biological network analysis, and identification of gene clusters
within genomes.
Software
- GCQuery - Finding related gene clusters on a given
genome from a given query cluster
- ISPAlign - Intermediate sequence profile alignment
- MotifEnumerator - Improved pattern-driven
algorithms for motif finding in DNA sequences
- NRAlign - Neighboring residue alignment
- PathMatch and GraphMatch
- Path matching and graph matching in biological networks
- PSAlign - Preserving multiple sequence alignment
- SSFold - Predicting protein folding pathways at the
mesoscopic level based on native interactions between secondary structure
elements
Courses
- Spring 10, 09: BICH 489/689 Special Topics in
Computational Techniques for Evolutionary Analysis
- Fall 09, Spring 09: CSCE 222 Discrete Structures for
Computing
- Fall 09, 08, 07, 06, 05, Spring 04: CSCE 433 Formal
Languages and Automata
- Spring 08, 07, 06, 05, 03: CPSC 627 Theory of
Computability
- Fall 04, 03 and 02: CPSC/BICH 689 Special Topics in
Computational Biology