Figure S2: Results of querying 123 E. coli K12 operons within its own genome



Query: mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ (size: 15)


Expect = 6.9841e-36, size = 15, chromosome:U00096.faa
gi|1786269|gb|AAC73192.1| conserved protein [Escherichia coli K12] [80, (mraZ 2.0000e-85)] [+]
gi|1786270|gb|AAC73193.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli K12] [81, (mraW 0.0000e+00)] [+]
gi|1786271|gb|AAC73194.1| membrane bound cell division protein at septum containing leucine zipper motif [Escherichia coli K12] [82, (ftsL 7.0000e-53)] [+]
gi|1786272|gb|AAC73195.1| transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Escherichia coli K12] [83, (ftsI 0.0000e+00)] [+]
gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli K12] [84, (murE 0.0000e+00)] [+]
gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli K12] [85, (murF 0.0000e+00)] [+]
gi|1786275|gb|AAC73198.1| phospho-N-acetylmuramoyl-pentapeptide transferase [Escherichia coli K12] [86, (mraY 0.0000e+00)] [+]
gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli K12] [87, (murD 0.0000e+00)] [+]
gi|1786277|gb|AAC73200.1| integral membrane protein involved in stabilizing FstZ ring during cell division [Escherichia coli K12] [88, (ftsW 0.0000e+00)] [+]
gi|1786278|gb|AAC73201.1| N-acetylglucosaminyl transferase [Escherichia coli K12] [89, (murG 0.0000e+00)] [+]
gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli K12] [90, (murC 0.0000e+00)] [+]
gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli K12] [91, (ddlB 0.0000e+00)] [+]
gi|1786281|gb|AAC73204.1| membrane anchored protein involved in growth of wall at septum [Escherichia coli K12] [92, (ftsQ 0.0000e+00)] [+]
gi|1786282|gb|AAC73205.1| ATP-binding cell division protein involved in recruitment of FtsK to Z ring [Escherichia coli K12] [93, (ftsA 0.0000e+00)] [+]
gi|1786284|gb|AAC73206.1| GTP-binding tubulin-like cell division protein [Escherichia coli K12] [94, (ftsZ 0.0000e+00)] [+]


Expect = 1.1082e-13, size = 16, chromosome:U00096.faa
gi|1790680|gb|AAC77190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia coli K12] [4130, (murC 6.0000e-25)] [+]
gi|1786269|gb|AAC73192.1| conserved protein [Escherichia coli K12] [80, (mraZ 2.0000e-85)] [+]
gi|1786270|gb|AAC73193.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli K12] [81, (mraW 0.0000e+00)] [+]
gi|1786271|gb|AAC73194.1| membrane bound cell division protein at septum containing leucine zipper motif [Escherichia coli K12] [82, (ftsL 7.0000e-53)] [+]
gi|1786272|gb|AAC73195.1| transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Escherichia coli K12] [83, (ftsI 0.0000e+00)] [+]
gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli K12] [84, (murE 0.0000e+00)] [+]
gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli K12] [85, (murF 0.0000e+00)] [+]
gi|1786275|gb|AAC73198.1| phospho-N-acetylmuramoyl-pentapeptide transferase [Escherichia coli K12] [86, (mraY 0.0000e+00)] [+]
gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli K12] [87, (murD 0.0000e+00)] [+]
gi|1786277|gb|AAC73200.1| integral membrane protein involved in stabilizing FstZ ring during cell division [Escherichia coli K12] [88, (ftsW 0.0000e+00)] [+]
gi|1786278|gb|AAC73201.1| N-acetylglucosaminyl transferase [Escherichia coli K12] [89, (murG 0.0000e+00)] [+]
gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli K12] [90, (murC 0.0000e+00)] [+]
gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli K12] [91, (ddlB 0.0000e+00)] [+]
gi|1786281|gb|AAC73204.1| membrane anchored protein involved in growth of wall at septum [Escherichia coli K12] [92, (ftsQ 0.0000e+00)] [+]
gi|1786282|gb|AAC73205.1| ATP-binding cell division protein involved in recruitment of FtsK to Z ring [Escherichia coli K12] [93, (ftsA 0.0000e+00)] [+]
gi|1786284|gb|AAC73206.1| GTP-binding tubulin-like cell division protein [Escherichia coli K12] [94, (ftsZ 0.0000e+00)] [+]


Expect = 4.4892e-13, size = 16, chromosome:U00096.faa
gi|1786269|gb|AAC73192.1| conserved protein [Escherichia coli K12] [80, (mraZ 2.0000e-85)] [+]
gi|1786270|gb|AAC73193.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli K12] [81, (mraW 0.0000e+00)] [+]
gi|1786271|gb|AAC73194.1| membrane bound cell division protein at septum containing leucine zipper motif [Escherichia coli K12] [82, (ftsL 7.0000e-53)] [+]
gi|1786272|gb|AAC73195.1| transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Escherichia coli K12] [83, (ftsI 0.0000e+00)] [+]
gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli K12] [84, (murE 0.0000e+00)] [+]
gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli K12] [85, (murF 0.0000e+00)] [+]
gi|1786275|gb|AAC73198.1| phospho-N-acetylmuramoyl-pentapeptide transferase [Escherichia coli K12] [86, (mraY 0.0000e+00)] [+]
gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli K12] [87, (murD 0.0000e+00)] [+]
gi|1786277|gb|AAC73200.1| integral membrane protein involved in stabilizing FstZ ring during cell division [Escherichia coli K12] [88, (ftsW 0.0000e+00)] [+]
gi|1786278|gb|AAC73201.1| N-acetylglucosaminyl transferase [Escherichia coli K12] [89, (murG 0.0000e+00)] [+]
gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli K12] [90, (murC 0.0000e+00)] [+]
gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli K12] [91, (ddlB 0.0000e+00)] [+]
gi|1786281|gb|AAC73204.1| membrane anchored protein involved in growth of wall at septum [Escherichia coli K12] [92, (ftsQ 0.0000e+00)] [+]
gi|1786282|gb|AAC73205.1| ATP-binding cell division protein involved in recruitment of FtsK to Z ring [Escherichia coli K12] [93, (ftsA 0.0000e+00)] [+]
gi|1786284|gb|AAC73206.1| GTP-binding tubulin-like cell division protein [Escherichia coli K12] [94, (ftsZ 0.0000e+00)] [+]
gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli K12] [370, (ddlB 4.0000e-45)] [-]


Expect = 4.1148e-12, size = 18, chromosome:U00096.faa
gi|1786269|gb|AAC73192.1| conserved protein [Escherichia coli K12] [80, (mraZ 2.0000e-85)] [+]
gi|1786270|gb|AAC73193.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli K12] [81, (mraW 0.0000e+00)] [+]
gi|1786271|gb|AAC73194.1| membrane bound cell division protein at septum containing leucine zipper motif [Escherichia coli K12] [82, (ftsL 7.0000e-53)] [+]
gi|1786272|gb|AAC73195.1| transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Escherichia coli K12] [83, (ftsI 0.0000e+00)] [+]
gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli K12] [84, (murE 0.0000e+00)] [+]
gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli K12] [85, (murF 0.0000e+00)] [+]
gi|1786275|gb|AAC73198.1| phospho-N-acetylmuramoyl-pentapeptide transferase [Escherichia coli K12] [86, (mraY 0.0000e+00)] [+]
gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli K12] [87, (murD 0.0000e+00)] [+]
gi|1786277|gb|AAC73200.1| integral membrane protein involved in stabilizing FstZ ring during cell division [Escherichia coli K12] [88, (ftsW 0.0000e+00)] [+]
gi|1786278|gb|AAC73201.1| N-acetylglucosaminyl transferase [Escherichia coli K12] [89, (murG 0.0000e+00)] [+]
gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli K12] [90, (murC 0.0000e+00)] [+]
gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli K12] [91, (ddlB 0.0000e+00)] [+]
gi|1786281|gb|AAC73204.1| membrane anchored protein involved in growth of wall at septum [Escherichia coli K12] [92, (ftsQ 0.0000e+00)] [+]
gi|1786282|gb|AAC73205.1| ATP-binding cell division protein involved in recruitment of FtsK to Z ring [Escherichia coli K12] [93, (ftsA 0.0000e+00)] [+]
gi|1786284|gb|AAC73206.1| GTP-binding tubulin-like cell division protein [Escherichia coli K12] [94, (ftsZ 0.0000e+00)] [+]
gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli K12] [370, (ddlB 4.0000e-45)] [-]
gi|1786853|gb|AAC73735.1| cell wall shape-determining protein [Escherichia coli K12] [624, (ftsW 3.0000e-34)] [-]
gi|1786854|gb|AAC73736.1| transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) [Escherichia coli K12] [625, (ftsI 6.0000e-33)] [-]


Expect = 4.5236e-11, size = 19, chromosome:U00096.faa
gi|1790680|gb|AAC77190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia coli K12] [4130, (murC 6.0000e-25)] [+]
gi|1786269|gb|AAC73192.1| conserved protein [Escherichia coli K12] [80, (mraZ 2.0000e-85)] [+]
gi|1786270|gb|AAC73193.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli K12] [81, (mraW 0.0000e+00)] [+]
gi|1786271|gb|AAC73194.1| membrane bound cell division protein at septum containing leucine zipper motif [Escherichia coli K12] [82, (ftsL 7.0000e-53)] [+]
gi|1786272|gb|AAC73195.1| transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Escherichia coli K12] [83, (ftsI 0.0000e+00)] [+]
gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli K12] [84, (murE 0.0000e+00)] [+]
gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli K12] [85, (murF 0.0000e+00)] [+]
gi|1786275|gb|AAC73198.1| phospho-N-acetylmuramoyl-pentapeptide transferase [Escherichia coli K12] [86, (mraY 0.0000e+00)] [+]
gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli K12] [87, (murD 0.0000e+00)] [+]
gi|1786277|gb|AAC73200.1| integral membrane protein involved in stabilizing FstZ ring during cell division [Escherichia coli K12] [88, (ftsW 0.0000e+00)] [+]
gi|1786278|gb|AAC73201.1| N-acetylglucosaminyl transferase [Escherichia coli K12] [89, (murG 0.0000e+00)] [+]
gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli K12] [90, (murC 0.0000e+00)] [+]
gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli K12] [91, (ddlB 0.0000e+00)] [+]
gi|1786281|gb|AAC73204.1| membrane anchored protein involved in growth of wall at septum [Escherichia coli K12] [92, (ftsQ 0.0000e+00)] [+]
gi|1786282|gb|AAC73205.1| ATP-binding cell division protein involved in recruitment of FtsK to Z ring [Escherichia coli K12] [93, (ftsA 0.0000e+00)] [+]
gi|1786284|gb|AAC73206.1| GTP-binding tubulin-like cell division protein [Escherichia coli K12] [94, (ftsZ 0.0000e+00)] [+]
gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli K12] [370, (ddlB 4.0000e-45)] [-]
gi|1786853|gb|AAC73735.1| cell wall shape-determining protein [Escherichia coli K12] [624, (ftsW 3.0000e-34)] [-]
gi|1786854|gb|AAC73736.1| transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) [Escherichia coli K12] [625, (ftsI 6.0000e-33)] [-]



Query: napFDAGHBC-ccmABCDEFGH (size: 15)


Expect = 3.3442e-30, size = 15, chromosome:U00096.faa
gi|1788522|gb|AAC75254.1| heme lyase, CcmH subunit [Escherichia coli K12] [2165, (ccmH 0.0000e+00)] [-]
gi|1788523|gb|AAC75255.1| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia coli K12] [2166, (ccmG 7.0000e-82)] [-]
gi|1788524|gb|AAC75256.1| heme lyase, CcmF subunit [Escherichia coli K12] [2167, (ccmF 0.0000e+00)] [-]
gi|1788525|gb|AAC75257.1| periplasmic heme chaperone [Escherichia coli K12] [2168, (ccmE 4.0000e-89)] [-]
gi|1788526|gb|AAC75258.1| cytochrome c biogenesis protein [Escherichia coli K12] [2169, (ccmD 4.0000e-13)] [-]
gi|1788527|gb|AAC75259.1| heme exporter subunit [Escherichia coli K12] [2170, (ccmC 0.0000e+00)] [-]
gi|1788528|gb|AAC75260.1| heme exporter subunit [Escherichia coli K12] [2171, (ccmB 4.0000e-71)] [-]
gi|87082064|gb|AAC75261.2| heme exporter subunit [Escherichia coli K12] [2172, (ccmA 0.0000e+00)] [-]
gi|1788530|gb|AAC75262.1| nitrate reductase, cytochrome c-type, periplasmic [Escherichia coli K12] [2173, (napC 0.0000e+00)] [-]
gi|87082065|gb|AAC75263.2| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Escherichia coli K12] [2174, (napB 6.0000e-88)] [-]
gi|1788532|gb|AAC75264.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2175, (napH 0.0000e+00)] [-]
gi|1788533|gb|AAC75265.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2176, (napF 6.0000e-10) (napG 0.0000e+00)] [-]
gi|1788534|gb|AAC75266.1| nitrate reductase, periplasmic, large subunit [Escherichia coli K12] [2177, (napA 0.0000e+00)] [-]
gi|1788535|gb|AAC75267.1| assembly protein for periplasmic nitrate reductase [Escherichia coli K12] [2178, (napD 5.0000e-45)] [-]
gi|1788536|gb|AAC75268.1| ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) [Escherichia coli K12] [2179, (napF 0.0000e+00) (napG 1.0000e-09)] [-]


Expect = 1.4941e-13, size = 16, chromosome:U00096.faa
gi|1788522|gb|AAC75254.1| heme lyase, CcmH subunit [Escherichia coli K12] [2165, (ccmH 0.0000e+00)] [-]
gi|1788523|gb|AAC75255.1| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia coli K12] [2166, (ccmG 7.0000e-82)] [-]
gi|1788524|gb|AAC75256.1| heme lyase, CcmF subunit [Escherichia coli K12] [2167, (ccmF 0.0000e+00)] [-]
gi|1788525|gb|AAC75257.1| periplasmic heme chaperone [Escherichia coli K12] [2168, (ccmE 4.0000e-89)] [-]
gi|1788526|gb|AAC75258.1| cytochrome c biogenesis protein [Escherichia coli K12] [2169, (ccmD 4.0000e-13)] [-]
gi|1788527|gb|AAC75259.1| heme exporter subunit [Escherichia coli K12] [2170, (ccmC 0.0000e+00)] [-]
gi|1788528|gb|AAC75260.1| heme exporter subunit [Escherichia coli K12] [2171, (ccmB 4.0000e-71)] [-]
gi|87082064|gb|AAC75261.2| heme exporter subunit [Escherichia coli K12] [2172, (ccmA 0.0000e+00)] [-]
gi|1788530|gb|AAC75262.1| nitrate reductase, cytochrome c-type, periplasmic [Escherichia coli K12] [2173, (napC 0.0000e+00)] [-]
gi|87082065|gb|AAC75263.2| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Escherichia coli K12] [2174, (napB 6.0000e-88)] [-]
gi|1788532|gb|AAC75264.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2175, (napH 0.0000e+00)] [-]
gi|1788533|gb|AAC75265.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2176, (napF 6.0000e-10) (napG 0.0000e+00)] [-]
gi|1788534|gb|AAC75266.1| nitrate reductase, periplasmic, large subunit [Escherichia coli K12] [2177, (napA 0.0000e+00)] [-]
gi|1788535|gb|AAC75267.1| assembly protein for periplasmic nitrate reductase [Escherichia coli K12] [2178, (napD 5.0000e-45)] [-]
gi|1788536|gb|AAC75268.1| ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) [Escherichia coli K12] [2179, (napF 0.0000e+00) (napG 1.0000e-09)] [-]
gi|1788644|gb|AAC75366.1| histidine/lysine/arginine/ornithine transporter subunit [Escherichia coli K12] [2279, (ccmA 6.0000e-09)] [-]


Expect = 1.4866e-08, size = 18, chromosome:U00096.faa
gi|87081994|gb|AAC74942.2| trimethylamine N-oxide reductase system III, catalytic subunit [Escherichia coli K12] [1852, (napA 1.0000e-07)] [-]
gi|1788181|gb|AAC74943.1| TMAO reductase III (TorYZ), cytochrome c-type subunit [Escherichia coli K12] [1853, (napC 2.0000e-39)] [-]
gi|1788225|gb|AAC74984.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [1893, (ccmA 1.0000e-09)] [-]
gi|1788522|gb|AAC75254.1| heme lyase, CcmH subunit [Escherichia coli K12] [2165, (ccmH 0.0000e+00)] [-]
gi|1788523|gb|AAC75255.1| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia coli K12] [2166, (ccmG 7.0000e-82)] [-]
gi|1788524|gb|AAC75256.1| heme lyase, CcmF subunit [Escherichia coli K12] [2167, (ccmF 0.0000e+00)] [-]
gi|1788525|gb|AAC75257.1| periplasmic heme chaperone [Escherichia coli K12] [2168, (ccmE 4.0000e-89)] [-]
gi|1788526|gb|AAC75258.1| cytochrome c biogenesis protein [Escherichia coli K12] [2169, (ccmD 4.0000e-13)] [-]
gi|1788527|gb|AAC75259.1| heme exporter subunit [Escherichia coli K12] [2170, (ccmC 0.0000e+00)] [-]
gi|1788528|gb|AAC75260.1| heme exporter subunit [Escherichia coli K12] [2171, (ccmB 4.0000e-71)] [-]
gi|87082064|gb|AAC75261.2| heme exporter subunit [Escherichia coli K12] [2172, (ccmA 0.0000e+00)] [-]
gi|1788530|gb|AAC75262.1| nitrate reductase, cytochrome c-type, periplasmic [Escherichia coli K12] [2173, (napC 0.0000e+00)] [-]
gi|87082065|gb|AAC75263.2| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Escherichia coli K12] [2174, (napB 6.0000e-88)] [-]
gi|1788532|gb|AAC75264.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2175, (napH 0.0000e+00)] [-]
gi|1788533|gb|AAC75265.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2176, (napF 6.0000e-10) (napG 0.0000e+00)] [-]
gi|1788534|gb|AAC75266.1| nitrate reductase, periplasmic, large subunit [Escherichia coli K12] [2177, (napA 0.0000e+00)] [-]
gi|1788535|gb|AAC75267.1| assembly protein for periplasmic nitrate reductase [Escherichia coli K12] [2178, (napD 5.0000e-45)] [-]
gi|1788536|gb|AAC75268.1| ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) [Escherichia coli K12] [2179, (napF 0.0000e+00) (napG 1.0000e-09)] [-]


Expect = 1.2073e-07, size = 19, chromosome:U00096.faa
gi|87081994|gb|AAC74942.2| trimethylamine N-oxide reductase system III, catalytic subunit [Escherichia coli K12] [1852, (napA 1.0000e-07)] [-]
gi|1788181|gb|AAC74943.1| TMAO reductase III (TorYZ), cytochrome c-type subunit [Escherichia coli K12] [1853, (napC 2.0000e-39)] [-]
gi|1788225|gb|AAC74984.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [1893, (ccmA 1.0000e-09)] [-]
gi|1788522|gb|AAC75254.1| heme lyase, CcmH subunit [Escherichia coli K12] [2165, (ccmH 0.0000e+00)] [-]
gi|1788523|gb|AAC75255.1| periplasmic thioredoxin of cytochrome c-type biogenesis [Escherichia coli K12] [2166, (ccmG 7.0000e-82)] [-]
gi|1788524|gb|AAC75256.1| heme lyase, CcmF subunit [Escherichia coli K12] [2167, (ccmF 0.0000e+00)] [-]
gi|1788525|gb|AAC75257.1| periplasmic heme chaperone [Escherichia coli K12] [2168, (ccmE 4.0000e-89)] [-]
gi|1788526|gb|AAC75258.1| cytochrome c biogenesis protein [Escherichia coli K12] [2169, (ccmD 4.0000e-13)] [-]
gi|1788527|gb|AAC75259.1| heme exporter subunit [Escherichia coli K12] [2170, (ccmC 0.0000e+00)] [-]
gi|1788528|gb|AAC75260.1| heme exporter subunit [Escherichia coli K12] [2171, (ccmB 4.0000e-71)] [-]
gi|87082064|gb|AAC75261.2| heme exporter subunit [Escherichia coli K12] [2172, (ccmA 0.0000e+00)] [-]
gi|1788530|gb|AAC75262.1| nitrate reductase, cytochrome c-type, periplasmic [Escherichia coli K12] [2173, (napC 0.0000e+00)] [-]
gi|87082065|gb|AAC75263.2| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Escherichia coli K12] [2174, (napB 6.0000e-88)] [-]
gi|1788532|gb|AAC75264.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2175, (napH 0.0000e+00)] [-]
gi|1788533|gb|AAC75265.1| ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) [Escherichia coli K12] [2176, (napF 6.0000e-10) (napG 0.0000e+00)] [-]
gi|1788534|gb|AAC75266.1| nitrate reductase, periplasmic, large subunit [Escherichia coli K12] [2177, (napA 0.0000e+00)] [-]
gi|1788535|gb|AAC75267.1| assembly protein for periplasmic nitrate reductase [Escherichia coli K12] [2178, (napD 5.0000e-45)] [-]
gi|1788536|gb|AAC75268.1| ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) [Escherichia coli K12] [2179, (napF 0.0000e+00) (napG 1.0000e-09)] [-]
gi|1788644|gb|AAC75366.1| histidine/lysine/arginine/ornithine transporter subunit [Escherichia coli K12] [2279, (ccmA 6.0000e-09)] [-]



Query: phnCDEEFGHIJKLMNOP (size: 15)


Expect = 1.1805e-22, size = 15, chromosome:U00096.faa
gi|1790530|gb|AAC77053.1| carbon-phosphorus lyase complex accessory protein [Escherichia coli K12] [3991, (phnP 0.0000e+00)] [-]
gi|1790531|gb|AAC77054.1| predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli K12] [3992, (phnO 3.0000e-83)] [-]
gi|1790532|gb|AAC77055.1| ribose 1,5-bisphosphokinase [Escherichia coli K12] [3993, (phnN 0.0000e+00)] [-]
gi|1790533|gb|AAC77056.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3994, (phnM 0.0000e+00)] [-]
gi|1790534|gb|AAC77057.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3995, (phnC 4.0000e-18) (phnK 5.0000e-14) (phnL 0.0000e+00)] [-]
gi|48994997|gb|AAT48240.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3996, (phnC 1.0000e-13) (phnK 0.0000e+00) (phnL 1.0000e-16)] [-]
gi|1790536|gb|AAC77059.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3997, (phnJ 0.0000e+00)] [-]
gi|1790537|gb|AAC77060.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3998, (phnI 0.0000e+00)] [-]
gi|1790538|gb|AAC77061.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3999, (phnH 0.0000e+00)] [-]
gi|1790539|gb|AAC77062.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [4000, (phnG 3.0000e-82)] [-]
gi|1790540|gb|AAC77063.1| predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation [Escherichia coli K12] [4001, (phnF 0.0000e+00)] [-]
gi|87082370|gb|AAC77064.2| phosphonate/organophosphate ester transporter (pseudogene) [Escherichia coli K12] [4002, (phnE 6.0000e-56)] [-]
gi|1790542|gb|AAC77065.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4003, (phnE 0.0000e+00)] [-]
gi|1790543|gb|AAC77066.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4004, (phnD 0.0000e+00)] [-]
gi|1790544|gb|AAC77067.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4005, (phnC 0.0000e+00) (phnK 5.0000e-11) (phnL 3.0000e-18)] [-]


Expect = 9.6042e-21, size = 16, chromosome:U00096.faa
gi|1790525|gb|AAC77048.1| fused D-allose transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [3986, (phnC 4.0000e-21) (phnK 4.0000e-19) (phnL 7.0000e-11)] [-]
gi|1790530|gb|AAC77053.1| carbon-phosphorus lyase complex accessory protein [Escherichia coli K12] [3991, (phnP 0.0000e+00)] [-]
gi|1790531|gb|AAC77054.1| predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli K12] [3992, (phnO 3.0000e-83)] [-]
gi|1790532|gb|AAC77055.1| ribose 1,5-bisphosphokinase [Escherichia coli K12] [3993, (phnN 0.0000e+00)] [-]
gi|1790533|gb|AAC77056.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3994, (phnM 0.0000e+00)] [-]
gi|1790534|gb|AAC77057.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3995, (phnC 4.0000e-18) (phnK 5.0000e-14) (phnL 0.0000e+00)] [-]
gi|48994997|gb|AAT48240.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3996, (phnC 1.0000e-13) (phnK 0.0000e+00) (phnL 1.0000e-16)] [-]
gi|1790536|gb|AAC77059.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3997, (phnJ 0.0000e+00)] [-]
gi|1790537|gb|AAC77060.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3998, (phnI 0.0000e+00)] [-]
gi|1790538|gb|AAC77061.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3999, (phnH 0.0000e+00)] [-]
gi|1790539|gb|AAC77062.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [4000, (phnG 3.0000e-82)] [-]
gi|1790540|gb|AAC77063.1| predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation [Escherichia coli K12] [4001, (phnF 0.0000e+00)] [-]
gi|87082370|gb|AAC77064.2| phosphonate/organophosphate ester transporter (pseudogene) [Escherichia coli K12] [4002, (phnE 6.0000e-56)] [-]
gi|1790542|gb|AAC77065.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4003, (phnE 0.0000e+00)] [-]
gi|1790543|gb|AAC77066.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4004, (phnD 0.0000e+00)] [-]
gi|1790544|gb|AAC77067.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4005, (phnC 0.0000e+00) (phnK 5.0000e-11) (phnL 3.0000e-18)] [-]


Expect = 2.0298e-10, size = 17, chromosome:U00096.faa
gi|1790467|gb|AAC77005.1| fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein [Escherichia coli K12] [3934, (phnC 8.0000e-22) (phnK 2.0000e-17) (phnL 4.0000e-14)] [+]
gi|1790525|gb|AAC77048.1| fused D-allose transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [3986, (phnC 4.0000e-21) (phnK 4.0000e-19) (phnL 7.0000e-11)] [-]
gi|1790530|gb|AAC77053.1| carbon-phosphorus lyase complex accessory protein [Escherichia coli K12] [3991, (phnP 0.0000e+00)] [-]
gi|1790531|gb|AAC77054.1| predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli K12] [3992, (phnO 3.0000e-83)] [-]
gi|1790532|gb|AAC77055.1| ribose 1,5-bisphosphokinase [Escherichia coli K12] [3993, (phnN 0.0000e+00)] [-]
gi|1790533|gb|AAC77056.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3994, (phnM 0.0000e+00)] [-]
gi|1790534|gb|AAC77057.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3995, (phnC 4.0000e-18) (phnK 5.0000e-14) (phnL 0.0000e+00)] [-]
gi|48994997|gb|AAT48240.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3996, (phnC 1.0000e-13) (phnK 0.0000e+00) (phnL 1.0000e-16)] [-]
gi|1790536|gb|AAC77059.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3997, (phnJ 0.0000e+00)] [-]
gi|1790537|gb|AAC77060.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3998, (phnI 0.0000e+00)] [-]
gi|1790538|gb|AAC77061.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [3999, (phnH 0.0000e+00)] [-]
gi|1790539|gb|AAC77062.1| carbon-phosphorus lyase complex subunit [Escherichia coli K12] [4000, (phnG 3.0000e-82)] [-]
gi|1790540|gb|AAC77063.1| predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation [Escherichia coli K12] [4001, (phnF 0.0000e+00)] [-]
gi|87082370|gb|AAC77064.2| phosphonate/organophosphate ester transporter (pseudogene) [Escherichia coli K12] [4002, (phnE 6.0000e-56)] [-]
gi|1790542|gb|AAC77065.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4003, (phnE 0.0000e+00)] [-]
gi|1790543|gb|AAC77066.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4004, (phnD 0.0000e+00)] [-]
gi|1790544|gb|AAC77067.1| phosphonate/organophosphate ester transporter subunit [Escherichia coli K12] [4005, (phnC 0.0000e+00) (phnK 5.0000e-11) (phnL 3.0000e-18)] [-]



Query: nuoABCEFGHIJKLMN (size: 13)


Expect = 8.2063e-28, size = 13, chromosome:U00096.faa
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (nuoL 1.0000e-19) (nuoM 8.0000e-18) (nuoN 0.0000e+00)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (nuoL 8.0000e-25) (nuoM 0.0000e+00) (nuoN 3.0000e-17)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (nuoL 0.0000e+00) (nuoM 2.0000e-17) (nuoN 2.0000e-16)] [-]
gi|1788615|gb|AAC75339.1| NADH:ubiquinone oxidoreductase, membrane subunit K [Escherichia coli K12] [2252, (nuoK 1.0000e-31)] [-]
gi|1788616|gb|AAC75340.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli K12] [2253, (nuoJ 3.0000e-84)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (nuoI 0.0000e+00)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (nuoH 0.0000e+00)] [-]
gi|1788619|gb|AAC75343.1| NADH:ubiquinone oxidoreductase, chain G [Escherichia coli K12] [2256, (nuoG 0.0000e+00)] [-]
gi|1788620|gb|AAC75344.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli K12] [2257, (nuoF 0.0000e+00)] [-]
gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli K12] [2258, (nuoE 3.0000e-97)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (nuoC 0.0000e+00)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (nuoB 0.0000e+00)] [-]
gi|1788625|gb|AAC75348.1| NADH:ubiquinone oxidoreductase, membrane subunit A [Escherichia coli K12] [2261, (nuoA 2.0000e-81)] [-]


Expect = 2.1088e-22, size = 25, chromosome:U00096.faa
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (nuoL 1.0000e-19) (nuoM 8.0000e-18) (nuoN 0.0000e+00)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (nuoL 8.0000e-25) (nuoM 0.0000e+00) (nuoN 3.0000e-17)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (nuoL 0.0000e+00) (nuoM 2.0000e-17) (nuoN 2.0000e-16)] [-]
gi|1788615|gb|AAC75339.1| NADH:ubiquinone oxidoreductase, membrane subunit K [Escherichia coli K12] [2252, (nuoK 1.0000e-31)] [-]
gi|1788616|gb|AAC75340.1| NADH:ubiquinone oxidoreductase, membrane subunit J [Escherichia coli K12] [2253, (nuoJ 3.0000e-84)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (nuoI 0.0000e+00)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (nuoH 0.0000e+00)] [-]
gi|1788619|gb|AAC75343.1| NADH:ubiquinone oxidoreductase, chain G [Escherichia coli K12] [2256, (nuoG 0.0000e+00)] [-]
gi|1788620|gb|AAC75344.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli K12] [2257, (nuoF 0.0000e+00)] [-]
gi|1788621|gb|AAC75345.1| NADH:ubiquinone oxidoreductase, chain E [Escherichia coli K12] [2258, (nuoE 3.0000e-97)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (nuoC 0.0000e+00)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (nuoB 0.0000e+00)] [-]
gi|1788625|gb|AAC75348.1| NADH:ubiquinone oxidoreductase, membrane subunit A [Escherichia coli K12] [2261, (nuoA 2.0000e-81)] [-]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (nuoL 5.0000e-34) (nuoM 9.0000e-30) (nuoN 2.0000e-18)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (nuoH 4.0000e-12)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (nuoL 6.0000e-51) (nuoM 8.0000e-15) (nuoN 4.0000e-17)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (nuoL 7.0000e-34) (nuoM 4.0000e-28) (nuoN 6.0000e-21)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (nuoC 2.0000e-36)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (nuoI 7.0000e-16)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (nuoB 2.0000e-19)] [+]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (nuoB 4.0000e-21)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (nuoI 2.0000e-14)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (nuoC 1.0000e-39)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (nuoH 4.0000e-13)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (nuoL 9.0000e-24) (nuoM 2.0000e-19) (nuoN 3.0000e-13)] [-]



Query: hyfABCDEFGHIJR-focB (size: 12)


Expect = 1.3893e-20, size = 12, chromosome:U00096.faa
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]


Expect = 1.2332e-15, size = 13, chromosome:U00096.faa
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]


Expect = 1.8489e-13, size = 30, chromosome:U00096.faa
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]


Expect = 5.6816e-13, size = 31, chromosome:U00096.faa
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]


Expect = 7.5619e-13, size = 33, chromosome:U00096.faa
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]


Expect = 1.2633e-12, size = 35, chromosome:U00096.faa
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hyfG 3.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hyfA 2.0000e-08)] [-]


Expect = 1.3343e-12, size = 34, chromosome:U00096.faa
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]


Expect = 1.7071e-12, size = 36, chromosome:U00096.faa
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hyfG 3.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hyfA 2.0000e-08)] [-]


Expect = 4.4684e-08, size = 38, chromosome:U00096.faa
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hyfG 3.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hyfA 2.0000e-08)] [-]
gi|87082249|gb|AAC76392.2| nitrite transporter [Escherichia coli K12] [3295, (focB 6.0000e-13)] [+]
gi|1789828|gb|AAC76447.1| sigma 54-dependent transcriptional regulator of rtcBA expression [Escherichia coli K12] [3348, (hyfR 2.0000e-29)] [+]


Expect = 4.2233e-07, size = 39, chromosome:U00096.faa
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hyfG 3.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hyfA 2.0000e-08)] [-]
gi|87082249|gb|AAC76392.2| nitrite transporter [Escherichia coli K12] [3295, (focB 6.0000e-13)] [+]
gi|1789828|gb|AAC76447.1| sigma 54-dependent transcriptional regulator of rtcBA expression [Escherichia coli K12] [3348, (hyfR 2.0000e-29)] [+]
gi|2367245|gb|AAC76597.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia coli K12] [3501, (hyfA 2.0000e-27)] [-]


Expect = 1.6715e-06, size = 38, chromosome:U00096.faa
gi|87081954|gb|AAC74741.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1649, (hyfA 5.0000e-13)] [-]
gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1652, (hyfA 6.0000e-08)] [-]
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hyfG 3.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hyfA 2.0000e-08)] [-]


Expect = 2.0310e-06, size = 39, chromosome:U00096.faa
gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli K12] [1568, (hyfA 1.0000e-12)] [+]
gi|87081954|gb|AAC74741.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1649, (hyfA 5.0000e-13)] [-]
gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1652, (hyfA 6.0000e-08)] [-]
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein [Escherichia coli K12] [2191, (hyfR 4.0000e-72)] [+]
gi|1788612|gb|AAC75336.1| NADH:ubiquinone oxidoreductase, membrane subunit N [Escherichia coli K12] [2249, (hyfB 2.0000e-10) (hyfD 2.0000e-17) (hyfF 7.0000e-17)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hyfB 1.0000e-20) (hyfD 7.0000e-15) (hyfF 1.0000e-24)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hyfB 3.0000e-19) (hyfD 4.0000e-45) (hyfF 6.0000e-24)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hyfH 1.0000e-07)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hyfG 2.0000e-36)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hyfI 3.0000e-19)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hyfA 3.0000e-30)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hyfA 0.0000e+00)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hyfB 0.0000e+00) (hyfD 1.0000e-30) (hyfF 1.0000e-34)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hyfC 0.0000e+00)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hyfB 2.0000e-23) (hyfD 0.0000e+00) (hyfF 2.0000e-23)] [+]
gi|1788830|gb|AAC75538.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2454, (hyfE 0.0000e+00)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hyfB 1.0000e-22) (hyfD 5.0000e-29) (hyfF 0.0000e+00)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hyfG 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hyfH 1.0000e-85)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hyfI 0.0000e+00)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hyfJ 2.0000e-76)] [+]
gi|87082117|gb|AAC75544.2| DNA-binding transcriptional activator, formate sensing [Escherichia coli K12] [2460, (hyfR 0.0000e+00)] [+]
gi|1788837|gb|AAC75545.1| predicted formate transporter [Escherichia coli K12] [2461, (focB 0.0000e+00)] [+]
gi|1788905|gb|AAC75607.1| predicted DNA-binding response regulator in two-component system [Escherichia coli K12] [2523, (hyfR 2.0000e-64)] [-]
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (hyfR 5.0000e-60)] [-]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hyfA 6.0000e-27)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hyfJ 3.0000e-29)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hyfI 2.0000e-79)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hyfH 4.0000e-29)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hyfG 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hyfC 3.0000e-64)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hyfB 1.0000e-72) (hyfD 7.0000e-21) (hyfF 1.0000e-24)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hyfA 8.0000e-53)] [-]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (hyfR 0.0000e+00)] [+]
gi|1789233|gb|AAC75907.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2818, (hyfR 6.0000e-55)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hyfA 9.0000e-31)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hyfA 1.0000e-30)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hyfG 3.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hyfA 2.0000e-08)] [-]



Query: rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ (size: 12)


Expect = 5.2075e-32, size = 12, chromosome:U00096.faa
gi|1789695|gb|AAC76324.1| 50S ribosomal subunit protein L36 [Escherichia coli K12] [3226, (rpmJ 2.0000e-17)] [-]
gi|1789696|gb|AAC76325.1| preprotein translocase membrane subunit [Escherichia coli K12] [3227, (secY 0.0000e+00)] [-]
gi|1789697|gb|AAC76326.1| 50S ribosomal subunit protein L15 [Escherichia coli K12] [3228, (rplO 1.0000e-39)] [-]
gi|1789698|gb|AAC76327.1| 50S ribosomal subunit protein L30 [Escherichia coli K12] [3229, (rpmD 3.0000e-28)] [-]
gi|1789699|gb|AAC76328.1| 30S ribosomal subunit protein S5 [Escherichia coli K12] [3230, (rpsE 7.0000e-91)] [-]
gi|1789700|gb|AAC76329.1| 50S ribosomal subunit protein L18 [Escherichia coli K12] [3231, (rplR 2.0000e-45)] [-]
gi|1789701|gb|AAC76330.1| 50S ribosomal subunit protein L6 [Escherichia coli K12] [3232, (rplF 1.0000e-88)] [-]
gi|1789702|gb|AAC76331.1| 30S ribosomal subunit protein S8 [Escherichia coli K12] [3233, (rpsH 1.0000e-68)] [-]
gi|1789703|gb|AAC76332.1| 30S ribosomal subunit protein S14 [Escherichia coli K12] [3234, (rpsN 5.0000e-54)] [-]
gi|1789704|gb|AAC76333.1| 50S ribosomal subunit protein L5 [Escherichia coli K12] [3235, (rplE 4.0000e-88)] [-]
gi|1789705|gb|AAC76334.1| 50S ribosomal subunit protein L24 [Escherichia coli K12] [3236, (rplX 2.0000e-54)] [-]
gi|1789706|gb|AAC76335.1| 50S ribosomal subunit protein L14 [Escherichia coli K12] [3237, (rplN 6.0000e-66)] [-]



Query: paaABCDEFGHIJK (size: 11)


Expect = 4.6481e-23, size = 11, chromosome:U00096.faa
gi|1787654|gb|AAC74470.1| predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Escherichia coli K12] [1366, (paaA 0.0000e+00)] [+]
gi|1787655|gb|AAC74471.1| predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Escherichia coli K12] [1367, (paaB 1.0000e-53)] [+]
gi|1787656|gb|AAC74472.1| predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Escherichia coli K12] [1368, (paaC 0.0000e+00)] [+]
gi|87081897|gb|AAC74473.2| predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Escherichia coli K12] [1369, (paaD 1.0000e-99)] [+]
gi|1787658|gb|AAC74474.1| predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Escherichia coli K12] [1370, (paaE 0.0000e+00)] [+]
gi|1787659|gb|AAC74475.1| enoyl-CoA hydratase-isomerase [Escherichia coli K12] [1371, (paaF 0.0000e+00) (paaG 2.0000e-25)] [+]
gi|1787660|gb|AAC74476.1| acyl-CoA hydratase [Escherichia coli K12] [1372, (paaF 1.0000e-22) (paaG 0.0000e+00)] [+]
gi|1787661|gb|AAC74477.1| 3-hydroxybutyryl-CoA dehydrogenase [Escherichia coli K12] [1373, (paaH 0.0000e+00)] [+]
gi|1787662|gb|AAC74478.1| predicted thioesterase [Escherichia coli K12] [1374, (paaI 1.0000e-78)] [+]
gi|1787663|gb|AAC74479.1| predicted beta-ketoadipyl CoA thiolase [Escherichia coli K12] [1375, (paaJ 0.0000e+00)] [+]
gi|1787664|gb|AAC74480.1| phenylacetyl-CoA ligase [Escherichia coli K12] [1376, (paaK 0.0000e+00)] [+]



Query: rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ (size: 11)


Expect = 1.8621e-29, size = 11, chromosome:U00096.faa
gi|1789707|gb|AAC76336.1| 30S ribosomal subunit protein S17 [Escherichia coli K12] [3238, (rpsQ 1.0000e-44)] [-]
gi|1789708|gb|AAC76337.1| 50S ribosomal subunit protein L29 [Escherichia coli K12] [3239, (rpmC 9.0000e-21)] [-]
gi|1789709|gb|AAC76338.1| 50S ribosomal subunit protein L16 [Escherichia coli K12] [3240, (rplP 9.0000e-75)] [-]
gi|1789710|gb|AAC76339.1| 30S ribosomal subunit protein S3 [Escherichia coli K12] [3241, (rpsC 0.0000e+00)] [-]
gi|1789711|gb|AAC76340.1| 50S ribosomal subunit protein L22 [Escherichia coli K12] [3242, (rplV 6.0000e-50)] [-]
gi|1789712|gb|AAC76341.1| 30S ribosomal subunit protein S19 [Escherichia coli K12] [3243, (rpsS 1.0000e-50)] [-]
gi|1789713|gb|AAC76342.1| 50S ribosomal subunit protein L2 [Escherichia coli K12] [3244, (rplB 0.0000e+00)] [-]
gi|1789714|gb|AAC76343.1| 50S ribosomal subunit protein L23 [Escherichia coli K12] [3245, (rplW 3.0000e-40)] [-]
gi|1789715|gb|AAC76344.1| 50S ribosomal subunit protein L4 [Escherichia coli K12] [3246, (rplD 0.0000e+00)] [-]
gi|1789716|gb|AAC76345.1| 50S ribosomal subunit protein L3 [Escherichia coli K12] [3247, (rplC 0.0000e+00)] [-]
gi|1789717|gb|AAC76346.1| 30S ribosomal subunit protein S10 [Escherichia coli K12] [3248, (rpsJ 5.0000e-54)] [-]



Query: waaQGPSBORYZU (size: 10)


Expect = 1.4525e-27, size = 11, chromosome:U00096.faa
gi|1790050|gb|AAC76644.1| ADP-heptose:LPS heptosyltransferase II [Escherichia coli K12] [3549, (rfaQ 7.0000e-08)] [+]
gi|1790053|gb|AAC76647.1| lipopolysaccharide core biosynthesis [Escherichia coli K12] [3552, (waaU 0.0000e+00)] [-]
gi|1790054|gb|AAC76648.1| lipopolysaccharide core biosynthesis protein [Escherichia coli K12] [3553, (rfaZ 0.0000e+00)] [-]
gi|1790055|gb|AAC76649.1| lipopolysaccharide core biosynthesis protein [Escherichia coli K12] [3554, (rfaY 0.0000e+00)] [-]
gi|1790056|gb|AAC76650.1| UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase [Escherichia coli K12] [3555, (rfaI 1.0000e-48) (rfaJ 0.0000e+00)] [-]
gi|1790057|gb|AAC76651.1| UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase [Escherichia coli K12] [3556, (rfaI 0.0000e+00) (rfaJ 4.0000e-44)] [-]
gi|1790058|gb|AAC76652.1| UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase [Escherichia coli K12] [3557, (rfaB 0.0000e+00)] [-]
gi|1790059|gb|AAC76653.1| lipopolysaccharide core biosynthesis protein [Escherichia coli K12] [3558, (rfaS 0.0000e+00)] [-]
gi|1790060|gb|AAC76654.1| kinase that phosphorylates core heptose of lipopolysaccharide [Escherichia coli K12] [3559, (rfaP 0.0000e+00)] [-]
gi|1790061|gb|AAC76655.1| glucosyltransferase I [Escherichia coli K12] [3560, (rfaG 0.0000e+00)] [-]
gi|1790062|gb|AAC76656.1| lipopolysaccharide core biosynthesis protein [Escherichia coli K12] [3561, (rfaQ 0.0000e+00)] [-]



Query: atpIBEFHAGDC (size: 9)


Expect = 3.1192e-23, size = 9, chromosome:U00096.faa
gi|1790169|gb|AAC76754.1| F1 sector of membrane-bound ATP synthase, epsilon subunit [Escherichia coli K12] [3662, (atpC 6.0000e-66)] [-]
gi|1790170|gb|AAC76755.1| F1 sector of membrane-bound ATP synthase, beta subunit [Escherichia coli K12] [3663, (atpA 1.0000e-19) (atpD 0.0000e+00)] [-]
gi|1790171|gb|AAC76756.1| F1 sector of membrane-bound ATP synthase, gamma subunit [Escherichia coli K12] [3664, (atpG 0.0000e+00)] [-]
gi|1790172|gb|AAC76757.1| F1 sector of membrane-bound ATP synthase, alpha subunit [Escherichia coli K12] [3665, (atpA 0.0000e+00) (atpD 5.0000e-26)] [-]
gi|1790173|gb|AAC76758.1| F1 sector of membrane-bound ATP synthase, delta subunit [Escherichia coli K12] [3666, (atpH 1.0000e-93)] [-]
gi|1790174|gb|AAC76759.1| F0 sector of membrane-bound ATP synthase, subunit b [Escherichia coli K12] [3667, (atpF 1.0000e-66)] [-]
gi|1790175|gb|AAC76760.1| F0 sector of membrane-bound ATP synthase, subunit c [Escherichia coli K12] [3668, (atpE 4.0000e-22)] [-]
gi|1790176|gb|AAC76761.1| F0 sector of membrane-bound ATP synthase, subunit a [Escherichia coli K12] [3669, (atpB 0.0000e+00)] [-]
gi|87082325|gb|AAC76762.2| ATP synthase, membrane-bound accesory subunit [Escherichia coli K12] [3670, (atpI 9.0000e-52)] [-]



Query: flgBCDEFGHIJ (size: 9)


Expect = 3.1192e-24, size = 9, chromosome:U00096.faa
gi|1787313|gb|AAC74157.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli K12] [1042, (flgB 8.0000e-74)] [+]
gi|1787314|gb|AAC74158.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli K12] [1043, (flgC 4.0000e-71)] [+]
gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli K12] [1044, (flgD 0.0000e+00)] [+]
gi|1787316|gb|AAC74160.1| flagellar hook protein [Escherichia coli K12] [1045, (flgE 0.0000e+00) (flgF 4.0000e-09) (flgG 2.0000e-16)] [+]
gi|1787317|gb|AAC74161.1| flagellar component of cell-proximal portion of basal-body rod [Escherichia coli K12] [1046, (flgF 0.0000e+00) (flgG 2.0000e-16)] [+]
gi|1787318|gb|AAC74162.1| flagellar component of cell-distal portion of basal-body rod [Escherichia coli K12] [1047, (flgE 5.0000e-17) (flgF 5.0000e-19) (flgG 0.0000e+00)] [+]
gi|1787319|gb|AAC74163.1| flagellar protein of basal-body outer-membrane L ring [Escherichia coli K12] [1048, (flgH 0.0000e+00)] [+]
gi|1787320|gb|AAC74164.1| predicted flagellar basal body protein [Escherichia coli K12] [1049, (flgI 0.0000e+00)] [+]
gi|1787321|gb|AAC74165.1| muramidase [Escherichia coli K12] [1050, (flgJ 0.0000e+00)] [+]



Query: hycABCDEFGHI (size: 9)


Expect = 6.6100e-16, size = 9, chromosome:U00096.faa
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]


Expect = 1.2969e-15, size = 10, chromosome:U00096.faa
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hycB 4.0000e-32)] [-]
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]


Expect = 6.5684e-15, size = 9, chromosome:U00096.faa
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hycB 2.0000e-52)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hycC 3.0000e-84)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hycD 1.0000e-77)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hycC 6.0000e-12)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hycC 1.0000e-17)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hycE 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hycF 5.0000e-41)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hycG 1.0000e-84)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hycH 3.0000e-29)] [+]


Expect = 4.9798e-14, size = 26, chromosome:U00096.faa
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hycC 7.0000e-08)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hycC 1.0000e-13)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hycF 2.0000e-14)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (hycD 7.0000e-13)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hycE 1.0000e-39)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hycG 5.0000e-21)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hycB 5.0000e-34)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hycB 2.0000e-52)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hycC 3.0000e-84)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hycD 1.0000e-77)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hycC 6.0000e-12)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hycC 1.0000e-17)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hycE 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hycF 5.0000e-41)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hycG 1.0000e-84)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hycH 3.0000e-29)] [+]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hycB 4.0000e-32)] [-]
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]


Expect = 1.9266e-13, size = 30, chromosome:U00096.faa
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hycC 7.0000e-08)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hycC 1.0000e-13)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hycF 2.0000e-14)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (hycD 7.0000e-13)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hycE 1.0000e-39)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hycG 5.0000e-21)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hycB 5.0000e-34)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hycB 2.0000e-52)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hycC 3.0000e-84)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hycD 1.0000e-77)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hycC 6.0000e-12)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hycC 1.0000e-17)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hycE 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hycF 5.0000e-41)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hycG 1.0000e-84)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hycH 3.0000e-29)] [+]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hycB 4.0000e-32)] [-]
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hycB 3.0000e-29)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hycB 2.0000e-31)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hycE 2.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hycB 2.0000e-10)] [-]


Expect = 5.3420e-08, size = 33, chromosome:U00096.faa
gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli K12] [1568, (hycB 1.0000e-12)] [+]
gi|87081954|gb|AAC74741.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1649, (hycB 1.0000e-13)] [-]
gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1652, (hycB 2.0000e-08) (hycF 4.0000e-08)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hycC 7.0000e-08)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hycC 1.0000e-13)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hycF 2.0000e-14)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (hycD 7.0000e-13)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hycE 1.0000e-39)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hycG 5.0000e-21)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hycB 5.0000e-34)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hycB 2.0000e-52)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hycC 3.0000e-84)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hycD 1.0000e-77)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hycC 6.0000e-12)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hycC 1.0000e-17)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hycE 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hycF 5.0000e-41)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hycG 1.0000e-84)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hycH 3.0000e-29)] [+]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hycB 4.0000e-32)] [-]
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hycB 3.0000e-29)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hycB 2.0000e-31)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hycE 2.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hycB 2.0000e-10)] [-]


Expect = 5.4595e-08, size = 34, chromosome:U00096.faa
gi|1787749|gb|AAD13439.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible [Escherichia coli K12] [1454, (hycB 2.0000e-08)] [+]
gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli K12] [1568, (hycB 1.0000e-12)] [+]
gi|87081954|gb|AAC74741.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1649, (hycB 1.0000e-13)] [-]
gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1652, (hycB 2.0000e-08) (hycF 4.0000e-08)] [-]
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hycC 7.0000e-08)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hycC 1.0000e-13)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hycF 2.0000e-14)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (hycD 7.0000e-13)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hycE 1.0000e-39)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hycG 5.0000e-21)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hycB 5.0000e-34)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hycB 2.0000e-52)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hycC 3.0000e-84)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hycD 1.0000e-77)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hycC 6.0000e-12)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hycC 1.0000e-17)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hycE 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hycF 5.0000e-41)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hycG 1.0000e-84)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hycH 3.0000e-29)] [+]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hycB 4.0000e-32)] [-]
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hycB 3.0000e-29)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hycB 2.0000e-31)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hycE 2.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hycB 2.0000e-10)] [-]


Expect = 3.6579e-07, size = 31, chromosome:U00096.faa
gi|1788613|gb|AAC75337.1| NADH:ubiquinone oxidoreductase, membrane subunit M [Escherichia coli K12] [2250, (hycC 7.0000e-08)] [-]
gi|1788614|gb|AAC75338.1| NADH:ubiquinone oxidoreductase, membrane subunit L [Escherichia coli K12] [2251, (hycC 1.0000e-13)] [-]
gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli K12] [2254, (hycF 2.0000e-14)] [-]
gi|1788618|gb|AAC75342.1| NADH:ubiquinone oxidoreductase, membrane subunit H [Escherichia coli K12] [2255, (hycD 7.0000e-13)] [-]
gi|1788622|gb|AAC75346.1| NADH:ubiquinone oxidoreductase, chain C,D [Escherichia coli K12] [2259, (hycE 1.0000e-39)] [-]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli K12] [2260, (hycG 5.0000e-21)] [-]
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hycB 5.0000e-34)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hycB 2.0000e-52)] [+]
gi|1788827|gb|AAC75535.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2451, (hycC 3.0000e-84)] [+]
gi|87082115|gb|AAC75536.2| hydrogenase 4, membrane subunit [Escherichia coli K12] [2452, (hycD 1.0000e-77)] [+]
gi|1788829|gb|AAC75537.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2453, (hycC 6.0000e-12)] [+]
gi|1788831|gb|AAC75539.1| hydrogenase 4, membrane subunit [Escherichia coli K12] [2455, (hycC 1.0000e-17)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hycE 0.0000e+00)] [+]
gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2457, (hycF 5.0000e-41)] [+]
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli K12] [2458, (hycG 1.0000e-84)] [+]
gi|87082116|gb|AAC75543.2| predicted processing element hydrogenase 4 [Escherichia coli K12] [2459, (hycH 3.0000e-29)] [+]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hycB 4.0000e-32)] [-]
gi|1789072|gb|AAC75759.1| protease involved in processing C-terminal end of HycE [Escherichia coli K12] [2671, (hycI 4.0000e-89)] [-]
gi|1789073|gb|AAC75760.1| protein required for maturation of hydrogenase 3 [Escherichia coli K12] [2672, (hycH 6.0000e-76)] [-]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit [Escherichia coli K12] [2673, (hycG 0.0000e+00)] [-]
gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli K12] [2674, (hycF 0.0000e+00)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hycE 0.0000e+00)] [-]
gi|1789077|gb|AAC75764.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2676, (hycD 0.0000e+00)] [-]
gi|2367154|gb|AAC75765.1| hydrogenase 3, membrane subunit [Escherichia coli K12] [2677, (hycC 0.0000e+00)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hycB 0.0000e+00)] [-]
gi|1789080|gb|AAC75767.1| regulator of the transcriptional regulator FhlA [Escherichia coli K12] [2679, (hycA 3.0000e-87)] [-]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hycB 3.0000e-29)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hycB 2.0000e-31)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hycE 2.0000e-08)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hycB 2.0000e-10)] [-]
gi|2367245|gb|AAC76597.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia coli K12] [3501, (hycB 4.0000e-34)] [-]



Query: yiaKLMNO-lyxK-sgbHUE (size: 9)


Expect = 4.0783e-18, size = 9, chromosome:U00096.faa
gi|1790000|gb|AAC76599.1| 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent [Escherichia coli K12] [3503, (yiaK 0.0000e+00)] [+]
gi|1790001|gb|AAC76600.1| conserved protein [Escherichia coli K12] [3504, (yiaL 4.0000e-87)] [+]
gi|1790002|gb|AAC76601.1| predicted transporter [Escherichia coli K12] [3505, (yiaM 2.0000e-86)] [+]
gi|48994950|gb|AAT48194.1| predicted transporter [Escherichia coli K12] [3506, (yiaN 0.0000e+00)] [+]
gi|1790004|gb|AAC76603.1| predicted transporter [Escherichia coli K12] [3507, (yiaO 0.0000e+00)] [+]
gi|1790005|gb|AAC76604.1| L-xylulose kinase [Escherichia coli K12] [3508, (lyx 0.0000e+00)] [+]
gi|1790006|gb|AAC76605.1| 3-keto-L-gulonate 6-phosphate decarboxylase [Escherichia coli K12] [3509, (sgbH 0.0000e+00)] [+]
gi|87082294|gb|AAC76606.2| predicted L-xylulose 5-phosphate 3-epimerase [Escherichia coli K12] [3510, (sgbU 0.0000e+00)] [+]
gi|1790008|gb|AAC76607.1| L-ribulose-5-phosphate 4-epimerase [Escherichia coli K12] [3511, (sgbE 0.0000e+00)] [+]


Expect = 2.5556e-15, size = 10, chromosome:U00096.faa
gi|1789987|gb|AAC76588.1| xylulokinase [Escherichia coli K12] [3492, (lyx 8.0000e-31)] [-]
gi|1790000|gb|AAC76599.1| 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent [Escherichia coli K12] [3503, (yiaK 0.0000e+00)] [+]
gi|1790001|gb|AAC76600.1| conserved protein [Escherichia coli K12] [3504, (yiaL 4.0000e-87)] [+]
gi|1790002|gb|AAC76601.1| predicted transporter [Escherichia coli K12] [3505, (yiaM 2.0000e-86)] [+]
gi|48994950|gb|AAT48194.1| predicted transporter [Escherichia coli K12] [3506, (yiaN 0.0000e+00)] [+]
gi|1790004|gb|AAC76603.1| predicted transporter [Escherichia coli K12] [3507, (yiaO 0.0000e+00)] [+]
gi|1790005|gb|AAC76604.1| L-xylulose kinase [Escherichia coli K12] [3508, (lyx 0.0000e+00)] [+]
gi|1790006|gb|AAC76605.1| 3-keto-L-gulonate 6-phosphate decarboxylase [Escherichia coli K12] [3509, (sgbH 0.0000e+00)] [+]
gi|87082294|gb|AAC76606.2| predicted L-xylulose 5-phosphate 3-epimerase [Escherichia coli K12] [3510, (sgbU 0.0000e+00)] [+]
gi|1790008|gb|AAC76607.1| L-ribulose-5-phosphate 4-epimerase [Escherichia coli K12] [3511, (sgbE 0.0000e+00)] [+]



Query: yjeFE-amiB-mutL-miaA-hfq-hflXKC (size: 9)


Expect = 2.2302e-21, size = 9, chromosome:U00096.faa
gi|1790609|gb|AAC77124.1| predicted carbohydrate kinase [Escherichia coli K12] [4065, (yjeF 0.0000e+00)] [+]
gi|1790610|gb|AAC77125.1| ATPase with strong ADP affinity [Escherichia coli K12] [4066, (yjeE 7.0000e-87)] [+]
gi|1790611|gb|AAC77126.1| N-acetylmuramoyl-l-alanine amidase II [Escherichia coli K12] [4067, (amiB 0.0000e+00)] [+]
gi|1790612|gb|AAC77127.1| methyl-directed mismatch repair protein [Escherichia coli K12] [4068, (mutL 0.0000e+00)] [+]
gi|1790613|gb|AAC77128.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase [Escherichia coli K12] [4069, (miaA 0.0000e+00)] [+]
gi|1790614|gb|AAC77129.1| HF-I, host factor for RNA phage Q beta replication [Escherichia coli K12] [4070, (hfq 1.0000e-54)] [+]
gi|1790615|gb|AAC77130.1| predicted GTPase [Escherichia coli K12] [4071, (hflX 0.0000e+00)] [+]
gi|1790616|gb|AAC77131.1| modulator for HflB protease specific for phage lambda cII repressor [Escherichia coli K12] [4072, (hflK 0.0000e+00)] [+]
gi|1790617|gb|AAC77132.1| modulator for HflB protease specific for phage lambda cII repressor [Escherichia coli K12] [4073, (hflC 0.0000e+00) (hflK 1.0000e-07)] [+]



Query: sdhCDAB--sucABCD (size: 8)


Expect = 1.9153e-18, size = 8, chromosome:U00096.faa
gi|1786940|gb|AAC73815.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Escherichia coli K12] [701, (sdhC 8.0000e-69)] [+]
gi|1786941|gb|AAC73816.1| succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Escherichia coli K12] [702, (sdhD 1.0000e-49)] [+]
gi|1786942|gb|AAC73817.1| succinate dehydrogenase, flavoprotein subunit [Escherichia coli K12] [703, (sdhA 0.0000e+00)] [+]
gi|1786943|gb|AAC73818.1| succinate dehydrogenase, FeS subunit [Escherichia coli K12] [704, (sdhB 0.0000e+00)] [+]
gi|1786945|gb|AAC73820.1| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli K12] [705, (sucA 0.0000e+00)] [+]
gi|1786946|gb|AAC73821.1| dihydrolipoyltranssuccinase [Escherichia coli K12] [706, (sucB 0.0000e+00)] [+]
gi|1786948|gb|AAC73822.1| succinyl-CoA synthetase, beta subunit [Escherichia coli K12] [707, (sucC 0.0000e+00)] [+]
gi|1786949|gb|AAC73823.1| succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [Escherichia coli K12] [708, (sucD 0.0000e+00)] [+]



Query: hisLGDCBHAFI (size: 8)


Expect = 6.6968e-20, size = 8, chromosome:U00096.faa
gi|1788330|gb|AAC75080.1| ATP phosphoribosyltransferase [Escherichia coli K12] [1991, (hisG 0.0000e+00)] [+]
gi|1788331|gb|AAC75081.1| bifunctional histidinal dehydrogenase/ histidinol dehydrogenase [Escherichia coli K12] [1992, (hisD 0.0000e+00)] [+]
gi|1788332|gb|AAC75082.1| histidinol-phosphate aminotransferase [Escherichia coli K12] [1993, (hisC 0.0000e+00)] [+]
gi|87082027|gb|AAC75083.2| fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase [Escherichia coli K12] [1994, (hisB 0.0000e+00)] [+]
gi|1788334|gb|AAC75084.1| imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF [Escherichia coli K12] [1995, (hisH 0.0000e+00)] [+]
gi|87082028|gb|AAC75085.2| N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase [Escherichia coli K12] [1996, (hisA 0.0000e+00) (hisF 5.0000e-14)] [+]
gi|1788336|gb|AAC75086.1| imidazole glycerol phosphate synthase, catalytic subunit with HisH [Escherichia coli K12] [1997, (hisA 4.0000e-09) (hisF 0.0000e+00)] [+]
gi|2367128|gb|AAC75087.1| fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase [Escherichia coli K12] [1998, (hisI 0.0000e+00)] [+]


Expect = 7.8801e-06, size = 9, chromosome:U00096.faa
gi|1788330|gb|AAC75080.1| ATP phosphoribosyltransferase [Escherichia coli K12] [1991, (hisG 0.0000e+00)] [+]
gi|1788331|gb|AAC75081.1| bifunctional histidinal dehydrogenase/ histidinol dehydrogenase [Escherichia coli K12] [1992, (hisD 0.0000e+00)] [+]
gi|1788332|gb|AAC75082.1| histidinol-phosphate aminotransferase [Escherichia coli K12] [1993, (hisC 0.0000e+00)] [+]
gi|87082027|gb|AAC75083.2| fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase [Escherichia coli K12] [1994, (hisB 0.0000e+00)] [+]
gi|1788334|gb|AAC75084.1| imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF [Escherichia coli K12] [1995, (hisH 0.0000e+00)] [+]
gi|87082028|gb|AAC75085.2| N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase [Escherichia coli K12] [1996, (hisA 0.0000e+00) (hisF 5.0000e-14)] [+]
gi|1788336|gb|AAC75086.1| imidazole glycerol phosphate synthase, catalytic subunit with HisH [Escherichia coli K12] [1997, (hisA 4.0000e-09) (hisF 0.0000e+00)] [+]
gi|2367128|gb|AAC75087.1| fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase [Escherichia coli K12] [1998, (hisI 0.0000e+00)] [+]
gi|1788722|gb|AAC75438.1| prediected aminotransferase, PLP-dependent [Escherichia coli K12] [2353, (hisC 3.0000e-11)] [-]



Query: ecfK-skp-lpxD-fabZ-lpxAB-rnhB-dnaE (size: 8)


Expect = 1.3394e-20, size = 8, chromosome:U00096.faa
gi|1786374|gb|AAC73288.1| conserved protein [Escherichia coli K12] [173, (yaeT 0.0000e+00)] [+]
gi|1786375|gb|AAC73289.1| periplasmic chaperone [Escherichia coli K12] [174, (skp 1.0000e-73)] [+]
gi|1786376|gb|AAC73290.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase [Escherichia coli K12] [175, (lpxA 9.0000e-13) (lpxD 0.0000e+00)] [+]
gi|1786377|gb|AAC73291.1| (3R)-hydroxymyristol acyl carrier protein dehydratase [Escherichia coli K12] [176, (fabZ 3.0000e-84)] [+]
gi|1786378|gb|AAC73292.1| UDP-N-acetylglucosamine acetyltransferase [Escherichia coli K12] [177, (lpxA 0.0000e+00) (lpxD 1.0000e-12)] [+]
gi|1786379|gb|AAC73293.1| tetraacyldisaccharide-1-P synthase [Escherichia coli K12] [178, (lpxB 0.0000e+00)] [+]
gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli K12] [179, (rnhB 0.0000e+00)] [+]
gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli K12] [180, (dnaE 0.0000e+00)] [+]



Query: gcl-hyi-glxR-ybbVW-allB-ybbY-glxK (size: 8)


Expect = 1.6096e-15, size = 8, chromosome:U00096.faa
gi|1786717|gb|AAC73609.1| glyoxylate carboligase [Escherichia coli K12] [493, (gcl 0.0000e+00)] [+]
gi|1786718|gb|AAC73610.1| hydroxypyruvate isomerase [Escherichia coli K12] [494, (hyi 0.0000e+00)] [+]
gi|1786719|gb|AAC73611.1| tartronate semialdehyde reductase, NADH-dependent [Escherichia coli K12] [495, (glxR 0.0000e+00)] [+]
gi|1786720|gb|AAC73612.1| predicted protein [Escherichia coli K12] [496, (ybbV 1.0000e-42)] [+]
gi|87081749|gb|AAC73613.2| predicted allantoin transporter [Escherichia coli K12] [497, (ybbW 0.0000e+00)] [+]
gi|1786722|gb|AAC73614.1| allantoinase [Escherichia coli K12] [498, (allB 0.0000e+00)] [+]
gi|87081750|gb|AAC73615.2| predicted uracil/xanthine transporter [Escherichia coli K12] [499, (ybbY 0.0000e+00)] [+]
gi|1786724|gb|AAC73616.1| glycerate kinase II [Escherichia coli K12] [500, (glxK 0.0000e+00)] [+]



Query: hybOABCDEFG (size: 8)


Expect = 1.1740e-14, size = 8, chromosome:U00096.faa
gi|1789364|gb|AAC76026.1| hydrogenase 2 accessory protein [Escherichia coli K12] [2935, (hybG 2.0000e-43)] [-]
gi|1789365|gb|AAC76027.1| protein involved with the maturation of hydrogenases 1 and 2 [Escherichia coli K12] [2936, (hybF 6.0000e-65)] [-]
gi|1789366|gb|AAC76028.1| hydrogenase 2-specific chaperone [Escherichia coli K12] [2937, (hybE 7.0000e-93)] [-]
gi|1789367|gb|AAC76029.1| predicted maturation element for hydrogenase 2 [Escherichia coli K12] [2938, (hybD 3.0000e-88)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hybC 0.0000e+00)] [-]
gi|2367183|gb|AAC76031.1| predicted hydrogenase 2 cytochrome b type component [Escherichia coli K12] [2940, (hybB 0.0000e+00)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hybA 0.0000e+00)] [-]
gi|1789371|gb|AAC76033.1| hydrogenase 2, small subunit [Escherichia coli K12] [2942, (hybO 0.0000e+00)] [-]


Expect = 4.5111e-07, size = 15, chromosome:U00096.faa
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hybA 3.0000e-13)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hybC 2.0000e-08)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hybA 6.0000e-10)] [-]
gi|1789081|gb|AAC75768.1| protein involved in nickel insertion into hydrogenases 3 [Escherichia coli K12] [2680, (hybF 4.0000e-31)] [+]
gi|1789083|gb|AAC75770.1| protein required for maturation of hydrogenases 1 and 3 [Escherichia coli K12] [2682, (hybG 6.0000e-19)] [+]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hybA 3.0000e-09)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hybA 9.0000e-14)] [-]
gi|1789364|gb|AAC76026.1| hydrogenase 2 accessory protein [Escherichia coli K12] [2935, (hybG 2.0000e-43)] [-]
gi|1789365|gb|AAC76027.1| protein involved with the maturation of hydrogenases 1 and 2 [Escherichia coli K12] [2936, (hybF 6.0000e-65)] [-]
gi|1789366|gb|AAC76028.1| hydrogenase 2-specific chaperone [Escherichia coli K12] [2937, (hybE 7.0000e-93)] [-]
gi|1789367|gb|AAC76029.1| predicted maturation element for hydrogenase 2 [Escherichia coli K12] [2938, (hybD 3.0000e-88)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hybC 0.0000e+00)] [-]
gi|2367183|gb|AAC76031.1| predicted hydrogenase 2 cytochrome b type component [Escherichia coli K12] [2940, (hybB 0.0000e+00)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hybA 0.0000e+00)] [-]
gi|1789371|gb|AAC76033.1| hydrogenase 2, small subunit [Escherichia coli K12] [2942, (hybO 0.0000e+00)] [-]


Expect = 2.9473e-06, size = 18, chromosome:U00096.faa
gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit [Escherichia coli K12] [2436, (hybA 9.0000e-11)] [-]
gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli K12] [2450, (hybA 4.0000e-08)] [+]
gi|1788832|gb|AAC75540.1| hydrogenase 4, subunit [Escherichia coli K12] [2456, (hybC 3.0000e-08)] [+]
gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia coli K12] [2667, (hybA 3.0000e-13)] [-]
gi|1789076|gb|AAC75763.1| hydrogenase 3, large subunit [Escherichia coli K12] [2675, (hybC 2.0000e-08)] [-]
gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli K12] [2678, (hybA 6.0000e-10)] [-]
gi|1789081|gb|AAC75768.1| protein involved in nickel insertion into hydrogenases 3 [Escherichia coli K12] [2680, (hybF 4.0000e-31)] [+]
gi|1789083|gb|AAC75770.1| protein required for maturation of hydrogenases 1 and 3 [Escherichia coli K12] [2682, (hybG 6.0000e-19)] [+]
gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli K12] [2834, (hybA 3.0000e-09)] [-]
gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit [Escherichia coli K12] [2835, (hybA 9.0000e-14)] [-]
gi|1789364|gb|AAC76026.1| hydrogenase 2 accessory protein [Escherichia coli K12] [2935, (hybG 2.0000e-43)] [-]
gi|1789365|gb|AAC76027.1| protein involved with the maturation of hydrogenases 1 and 2 [Escherichia coli K12] [2936, (hybF 6.0000e-65)] [-]
gi|1789366|gb|AAC76028.1| hydrogenase 2-specific chaperone [Escherichia coli K12] [2937, (hybE 7.0000e-93)] [-]
gi|1789367|gb|AAC76029.1| predicted maturation element for hydrogenase 2 [Escherichia coli K12] [2938, (hybD 3.0000e-88)] [-]
gi|1789368|gb|AAC76030.1| hydrogenase 2, large subunit [Escherichia coli K12] [2939, (hybC 0.0000e+00)] [-]
gi|2367183|gb|AAC76031.1| predicted hydrogenase 2 cytochrome b type component [Escherichia coli K12] [2940, (hybB 0.0000e+00)] [-]
gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli K12] [2941, (hybA 0.0000e+00)] [-]
gi|1789371|gb|AAC76033.1| hydrogenase 2, small subunit [Escherichia coli K12] [2942, (hybO 0.0000e+00)] [-]



Query: yceD-rpmF-plsX-fabHDG-acpP-fabF (size: 8)


Expect = 1.6096e-15, size = 8, chromosome:U00096.faa
gi|1787329|gb|AAC74172.1| conserved protein [Escherichia coli K12] [1057, (yceD 5.0000e-87)] [+]
gi|1787330|gb|AAC74173.1| 50S ribosomal subunit protein L32 [Escherichia coli K12] [1058, (rpmF 2.0000e-28)] [+]
gi|87081831|gb|AAC74174.2| fatty acid/phospholipid synthesis protein [Escherichia coli K12] [1059, (plsX 0.0000e+00)] [+]
gi|1787333|gb|AAC74175.1| 3-oxoacyl-[acyl-carrier-protein] synthase III [Escherichia coli K12] [1060, (fabH 0.0000e+00)] [+]
gi|1787334|gb|AAC74176.1| malonyl-CoA-[acyl-carrier-protein] transacylase [Escherichia coli K12] [1061, (fabD 0.0000e+00)] [+]
gi|1787335|gb|AAC74177.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Escherichia coli K12] [1062, (fabG 0.0000e+00)] [+]
gi|1787336|gb|AAC74178.1| acyl carrier protein (ACP) [Escherichia coli K12] [1063, (acpP 6.0000e-29)] [+]
gi|1787337|gb|AAC74179.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Escherichia coli K12] [1064, (fabF 0.0000e+00)] [+]



Query: thrS-infC-rpmI-rplT-pheMST-ihfA (size: 7)


Expect = 2.1076e-15, size = 7, chromosome:U00096.faa
gi|1788005|gb|AAC74782.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli K12] [1690, (ihfA 9.0000e-53)] [-]
gi|1788006|gb|AAC74783.1| phenylalanine tRNA synthetase, beta subunit [Escherichia coli K12] [1691, (pheT 0.0000e+00)] [-]
gi|1788007|gb|AAC74784.1| phenylalanine tRNA synthetase, alpha subunit [Escherichia coli K12] [1692, (pheS 0.0000e+00)] [-]
gi|1788009|gb|AAC74786.1| 50S ribosomal subunit protein L20 [Escherichia coli K12] [1694, (rplT 7.0000e-53)] [-]
gi|1788010|gb|AAC74787.1| 50S ribosomal subunit protein L35 [Escherichia coli K12] [1695, (rpmI 2.0000e-19)] [-]
gi|1788012|gb|AAC74788.1| protein chain initiation factor IF-3 [Escherichia coli K12] [1696, (infC 8.0000e-84)] [-]
gi|1788013|gb|AAC74789.1| threonyl-tRNA synthetase [Escherichia coli K12] [1697, (thrS 0.0000e+00)] [-]



Query: metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp (size: 7)


Expect = 5.1414e-15, size = 7, chromosome:U00096.faa
gi|1789555|gb|AAC76198.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli K12] [3101, (pnp 0.0000e+00)] [-]
gi|1789556|gb|AAC76199.1| 30S ribosomal subunit protein S15 [Escherichia coli K12] [3102, (rpsO 4.0000e-46)] [-]
gi|2367200|gb|AAC76200.1| tRNA pseudouridine synthase [Escherichia coli K12] [3103, (truB 0.0000e+00)] [-]
gi|1789558|gb|AAC76201.1| 30s ribosome binding factor [Escherichia coli K12] [3104, (rbfA 7.0000e-71)] [-]
gi|1789559|gb|AAC76202.1| fused protein chain initiation factor 2, IF2: membrane protein/conserved protein [Escherichia coli K12] [3105, (infB 0.0000e+00)] [-]
gi|1789560|gb|AAC76203.1| transcription termination/antitermination L factor [Escherichia coli K12] [3106, (nusA 0.0000e+00)] [-]
gi|87082222|gb|AAC76204.2| conserved protein [Escherichia coli K12] [3107, (yhbC 1.0000e-81)] [-]



Query: rsxPABCDGE-nth (size: 7)


Expect = 6.3917e-18, size = 7, chromosome:U00096.faa
gi|1787914|gb|AAC74699.1| predicted inner membrane subunit [Escherichia coli K12] [1607, (rsxA 4.0000e-95) (rsxE 1.0000e-09)] [+]
gi|1787915|gb|AAC74700.1| predicted iron-sulfur protein [Escherichia coli K12] [1608, (rsxB 0.0000e+00)] [+]
gi|1787916|gb|AAC74701.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli K12] [1609, (rsxC 0.0000e+00)] [+]
gi|1787917|gb|AAC74702.1| predicted inner membrane oxidoreductase [Escherichia coli K12] [1610, (rsxD 0.0000e+00)] [+]
gi|1787918|gb|AAC74703.1| predicted oxidoreductase [Escherichia coli K12] [1611, (rsxG 0.0000e+00)] [+]
gi|1787919|gb|AAC74704.1| predicted inner membrane NADH-quinone reductase [Escherichia coli K12] [1612, (rsxA 5.0000e-15) (rsxE 0.0000e+00)] [+]
gi|1787920|gb|AAC74705.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) [Escherichia coli K12] [1613, (nth 0.0000e+00)] [+]



Query: aroKB-damX-dam-rpe-gph-trpS (size: 7)


Expect = 2.7421e-15, size = 7, chromosome:U00096.faa
gi|1789786|gb|AAC76409.1| tryptophanyl-tRNA synthetase [Escherichia coli K12] [3311, (trpS 0.0000e+00)] [-]
gi|1789787|gb|AAC76410.1| phosphoglycolate phosphatase [Escherichia coli K12] [3312, (gph 0.0000e+00)] [-]
gi|1789788|gb|AAC76411.1| D-ribulose-5-phosphate 3-epimerase [Escherichia coli K12] [3313, (rpe 0.0000e+00)] [-]
gi|1789789|gb|AAC76412.1| DNA adenine methylase [Escherichia coli K12] [3314, (dam 0.0000e+00)] [-]
gi|1789790|gb|AAC76413.1| predicted protein [Escherichia coli K12] [3315, (damX 0.0000e+00)] [-]
gi|1789791|gb|AAC76414.1| 3-dehydroquinate synthase [Escherichia coli K12] [3316, (aroB 0.0000e+00)] [-]
gi|87082255|gb|AAC76415.2| shikimate kinase I [Escherichia coli K12] [3317, (aroK 7.0000e-95)] [-]



Query: fimAICDFGH (size: 7)


Expect = 1.2289e-11, size = 7, chromosome:U00096.faa
gi|1790769|gb|AAC77270.1| major type 1 subunit fimbrin (pilin) [Escherichia coli K12] [4215, (fimA 1.0000e-72) (fimF 1.0000e-14) (fimI 8.0000e-20)] [+]
gi|87082421|gb|AAC77271.2| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia coli K12] [4216, (fimA 2.0000e-13) (fimF 8.0000e-17) (fimI 0.0000e+00)] [+]
gi|1790771|gb|AAC77272.1| chaperone, periplasmic [Escherichia coli K12] [4217, (fimC 0.0000e+00)] [+]
gi|1790772|gb|AAC77273.1| outer membrane usher protein, type 1 fimbrial synthesis [Escherichia coli K12] [4218, (fimD 0.0000e+00)] [+]
gi|1790773|gb|AAC77274.1| minor component of type 1 fimbriae [Escherichia coli K12] [4219, (fimA 1.0000e-09) (fimF 1.0000e-98) (fimI 8.0000e-17)] [+]
gi|1790774|gb|AAC77275.1| minor component of type 1 fimbriae [Escherichia coli K12] [4220, (fimG 7.0000e-83)] [+]
gi|1790775|gb|AAC77276.1| minor component of type 1 fimbriae [Escherichia coli K12] [4221, (fimH 0.0000e+00)] [+]


Expect = 1.1125e-08, size = 6, chromosome:U00096.faa
gi|87081804|gb|AAC74024.2| predicted fimbrial-like adhesin protein [Escherichia coli K12] [910, (fimA 2.0000e-11) (fimG 3.0000e-11) (fimI 8.0000e-11)] [+]
gi|1787171|gb|AAC74025.1| predicted periplasmic pilin chaperone [Escherichia coli K12] [911, (fimC 4.0000e-45)] [+]
gi|1787172|gb|AAC74026.1| predicted outer membrane usher protein [Escherichia coli K12] [912, (fimD 0.0000e+00)] [+]
gi|1787174|gb|AAC74028.1| predicted fimbrial-like adhesin protein [Escherichia coli K12] [914, (fimF 4.0000e-11) (fimI 1.0000e-08)] [+]
gi|87081805|gb|AAC74029.2| predicted fimbrial-like adhesin protein [Escherichia coli K12] [915, (fimF 5.0000e-19) (fimI 9.0000e-18)] [+]
gi|87081806|gb|AAC74030.2| predicted periplasmic pilini chaperone [Escherichia coli K12] [916, (fimC 1.0000e-29)] [+]



Query: fliLMNOPQR (size: 7)


Expect = 7.9897e-19, size = 7, chromosome:U00096.faa
gi|1788254|gb|AAC75011.1| flagellar biosynthesis protein [Escherichia coli K12] [1920, (fliL 2.0000e-83)] [+]
gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia coli K12] [1921, (fliM 0.0000e+00)] [+]
gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia coli K12] [1922, (fliN 5.0000e-73)] [+]
gi|87082005|gb|AAC75014.2| flagellar biosynthesis protein [Escherichia coli K12] [1923, (fliO 8.0000e-44)] [+]
gi|1788259|gb|AAC75015.1| flagellar biosynthesis protein [Escherichia coli K12] [1924, (fliP 0.0000e+00)] [+]
gi|1788260|gb|AAC75016.1| flagellar biosynthesis protein [Escherichia coli K12] [1925, (fliQ 2.0000e-26)] [+]
gi|1788261|gb|AAC75017.1| flagellar export pore protein [Escherichia coli K12] [1926, (fliR 0.0000e+00)] [+]



Query: nrfABCDEFG (size: 7)


Expect = 3.8406e-13, size = 7, chromosome:U00096.faa
gi|1790506|gb|AAC77040.1| nitrite reductase, formate-dependent, cytochrome [Escherichia coli K12] [3969, (nrfA 0.0000e+00)] [+]
gi|87082366|gb|AAC77041.2| nitrite reductase, formate-dependent, penta-heme cytochrome c [Escherichia coli K12] [3970, (nrfB 0.0000e+00)] [+]
gi|2367345|gb|AAC77042.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia coli K12] [3971, (nrfC 0.0000e+00)] [+]
gi|1790509|gb|AAC77043.1| formate-dependent nitrite reductase, membrane subunit [Escherichia coli K12] [3972, (nrfD 0.0000e+00)] [+]
gi|1790511|gb|AAD13457.1| heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE [Escherichia coli K12] [3973, (nrfE 0.0000e+00)] [+]
gi|1790512|gb|AAD13458.1| heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF [Escherichia coli K12] [3974, (nrfF 2.0000e-49)] [+]
gi|1790513|gb|AAD13459.1| heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG [Escherichia coli K12] [3975, (nrfG 0.0000e+00)] [+]



Query: rutABCDEFG (size: 7)


Expect = 9.1402e-15, size = 7, chromosome:U00096.faa
gi|87081818|gb|AAC74091.2| predicted transporter [Escherichia coli K12] [979, (rutG 0.0000e+00)] [-]
gi|87081819|gb|AAC74092.2| predicted oxidoreductase, flavin:NADH component [Escherichia coli K12] [980, (rutF 3.0000e-96)] [-]
gi|1787243|gb|AAC74093.1| predicted oxidoreductase [Escherichia coli K12] [981, (rutE 0.0000e+00)] [-]
gi|1787244|gb|AAC74094.1| predicted hydrolase [Escherichia coli K12] [982, (rutD 0.0000e+00)] [-]
gi|1787245|gb|AAC74095.1| conserved protein [Escherichia coli K12] [983, (rutC 2.0000e-71)] [-]
gi|87081820|gb|AAC74096.2| predicted enzyme [Escherichia coli K12] [984, (rutB 0.0000e+00)] [-]
gi|1787247|gb|AAC74097.1| predicted monooxygenase [Escherichia coli K12] [985, (rutA 0.0000e+00)] [-]


Expect = 4.4385e-07, size = 8, chromosome:U00096.faa
gi|1787166|gb|AAC74021.1| alkanesulfonate monooxygenase, FMNH(2)-dependent [Escherichia coli K12] [907, (rutA 1.0000e-11)] [-]
gi|87081818|gb|AAC74091.2| predicted transporter [Escherichia coli K12] [979, (rutG 0.0000e+00)] [-]
gi|87081819|gb|AAC74092.2| predicted oxidoreductase, flavin:NADH component [Escherichia coli K12] [980, (rutF 3.0000e-96)] [-]
gi|1787243|gb|AAC74093.1| predicted oxidoreductase [Escherichia coli K12] [981, (rutE 0.0000e+00)] [-]
gi|1787244|gb|AAC74094.1| predicted hydrolase [Escherichia coli K12] [982, (rutD 0.0000e+00)] [-]
gi|1787245|gb|AAC74095.1| conserved protein [Escherichia coli K12] [983, (rutC 2.0000e-71)] [-]
gi|87081820|gb|AAC74096.2| predicted enzyme [Escherichia coli K12] [984, (rutB 0.0000e+00)] [-]
gi|1787247|gb|AAC74097.1| predicted monooxygenase [Escherichia coli K12] [985, (rutA 0.0000e+00)] [-]



Query: srlAEBD-gutM-srlR-gutQ (size: 7)


Expect = 1.2470e-12, size = 7, chromosome:U00096.faa
gi|48994904|gb|AAT48148.1| glucitol/sorbitol-specific enzyme IIC component of PTS [Escherichia coli K12] [2656, (srlA 7.0000e-93)] [+]
gi|48994905|gb|AAT48149.1| glucitol/sorbitol-specific enzyme IIB component of PTS [Escherichia coli K12] [2657, (srlE 0.0000e+00)] [+]
gi|1789056|gb|AAC75746.1| glucitol/sorbitol-specific enzyme IIA component of PTS [Escherichia coli K12] [2658, (srlB 8.0000e-69)] [+]
gi|1789057|gb|AAC75747.1| sorbitol-6-phosphate dehydrogenase [Escherichia coli K12] [2659, (srlD 0.0000e+00)] [+]
gi|1789058|gb|AAC75748.1| DNA-binding transcriptional activator of glucitol operon [Escherichia coli K12] [2660, (gutM 4.0000e-57)] [+]
gi|1789059|gb|AAC75749.1| DNA-bindng transcriptional repressor [Escherichia coli K12] [2661, (srlR 0.0000e+00)] [+]
gi|87082151|gb|AAC75750.2| predicted phosphosugar-binding protein [Escherichia coli K12] [2662, (gutQ 0.0000e+00)] [+]


Expect = 1.0353e-07, size = 8, chromosome:U00096.faa
gi|48994904|gb|AAT48148.1| glucitol/sorbitol-specific enzyme IIC component of PTS [Escherichia coli K12] [2656, (srlA 7.0000e-93)] [+]
gi|48994905|gb|AAT48149.1| glucitol/sorbitol-specific enzyme IIB component of PTS [Escherichia coli K12] [2657, (srlE 0.0000e+00)] [+]
gi|1789056|gb|AAC75746.1| glucitol/sorbitol-specific enzyme IIA component of PTS [Escherichia coli K12] [2658, (srlB 8.0000e-69)] [+]
gi|1789057|gb|AAC75747.1| sorbitol-6-phosphate dehydrogenase [Escherichia coli K12] [2659, (srlD 0.0000e+00)] [+]
gi|1789058|gb|AAC75748.1| DNA-binding transcriptional activator of glucitol operon [Escherichia coli K12] [2660, (gutM 4.0000e-57)] [+]
gi|1789059|gb|AAC75749.1| DNA-bindng transcriptional repressor [Escherichia coli K12] [2661, (srlR 0.0000e+00)] [+]
gi|87082151|gb|AAC75750.2| predicted phosphosugar-binding protein [Escherichia coli K12] [2662, (gutQ 0.0000e+00)] [+]
gi|1789091|gb|AAC75777.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2689, (srlR 2.0000e-26)] [-]


Expect = 2.0376e-06, size = 9, chromosome:U00096.faa
gi|48994904|gb|AAT48148.1| glucitol/sorbitol-specific enzyme IIC component of PTS [Escherichia coli K12] [2656, (srlA 7.0000e-93)] [+]
gi|48994905|gb|AAT48149.1| glucitol/sorbitol-specific enzyme IIB component of PTS [Escherichia coli K12] [2657, (srlE 0.0000e+00)] [+]
gi|1789056|gb|AAC75746.1| glucitol/sorbitol-specific enzyme IIA component of PTS [Escherichia coli K12] [2658, (srlB 8.0000e-69)] [+]
gi|1789057|gb|AAC75747.1| sorbitol-6-phosphate dehydrogenase [Escherichia coli K12] [2659, (srlD 0.0000e+00)] [+]
gi|1789058|gb|AAC75748.1| DNA-binding transcriptional activator of glucitol operon [Escherichia coli K12] [2660, (gutM 4.0000e-57)] [+]
gi|1789059|gb|AAC75749.1| DNA-bindng transcriptional repressor [Escherichia coli K12] [2661, (srlR 0.0000e+00)] [+]
gi|87082151|gb|AAC75750.2| predicted phosphosugar-binding protein [Escherichia coli K12] [2662, (gutQ 0.0000e+00)] [+]
gi|1789091|gb|AAC75777.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2689, (srlR 2.0000e-26)] [-]
gi|87082160|gb|AAC75816.2| predicted deoxygluconate dehydrogenase [Escherichia coli K12] [2727, (srlD 6.0000e-18)] [-]


Expect = 2.0869e-06, size = 11, chromosome:U00096.faa
gi|48994904|gb|AAT48148.1| glucitol/sorbitol-specific enzyme IIC component of PTS [Escherichia coli K12] [2656, (srlA 7.0000e-93)] [+]
gi|48994905|gb|AAT48149.1| glucitol/sorbitol-specific enzyme IIB component of PTS [Escherichia coli K12] [2657, (srlE 0.0000e+00)] [+]
gi|1789056|gb|AAC75746.1| glucitol/sorbitol-specific enzyme IIA component of PTS [Escherichia coli K12] [2658, (srlB 8.0000e-69)] [+]
gi|1789057|gb|AAC75747.1| sorbitol-6-phosphate dehydrogenase [Escherichia coli K12] [2659, (srlD 0.0000e+00)] [+]
gi|1789058|gb|AAC75748.1| DNA-binding transcriptional activator of glucitol operon [Escherichia coli K12] [2660, (gutM 4.0000e-57)] [+]
gi|1789059|gb|AAC75749.1| DNA-bindng transcriptional repressor [Escherichia coli K12] [2661, (srlR 0.0000e+00)] [+]
gi|87082151|gb|AAC75750.2| predicted phosphosugar-binding protein [Escherichia coli K12] [2662, (gutQ 0.0000e+00)] [+]
gi|1789091|gb|AAC75777.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2689, (srlR 2.0000e-26)] [-]
gi|87082160|gb|AAC75816.2| predicted deoxygluconate dehydrogenase [Escherichia coli K12] [2727, (srlD 6.0000e-18)] [-]
gi|1789170|gb|AAC75847.1| DNA-binding transcriptional activator [Escherichia coli K12] [2758, (srlR 2.0000e-15)] [+]
gi|1789208|gb|AAC75881.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli K12] [2792, (srlD 2.0000e-10)] [-]


Expect = 6.1005e-06, size = 12, chromosome:U00096.faa
gi|48994904|gb|AAT48148.1| glucitol/sorbitol-specific enzyme IIC component of PTS [Escherichia coli K12] [2656, (srlA 7.0000e-93)] [+]
gi|48994905|gb|AAT48149.1| glucitol/sorbitol-specific enzyme IIB component of PTS [Escherichia coli K12] [2657, (srlE 0.0000e+00)] [+]
gi|1789056|gb|AAC75746.1| glucitol/sorbitol-specific enzyme IIA component of PTS [Escherichia coli K12] [2658, (srlB 8.0000e-69)] [+]
gi|1789057|gb|AAC75747.1| sorbitol-6-phosphate dehydrogenase [Escherichia coli K12] [2659, (srlD 0.0000e+00)] [+]
gi|1789058|gb|AAC75748.1| DNA-binding transcriptional activator of glucitol operon [Escherichia coli K12] [2660, (gutM 4.0000e-57)] [+]
gi|1789059|gb|AAC75749.1| DNA-bindng transcriptional repressor [Escherichia coli K12] [2661, (srlR 0.0000e+00)] [+]
gi|87082151|gb|AAC75750.2| predicted phosphosugar-binding protein [Escherichia coli K12] [2662, (gutQ 0.0000e+00)] [+]
gi|1789091|gb|AAC75777.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [2689, (srlR 2.0000e-26)] [-]
gi|87082160|gb|AAC75816.2| predicted deoxygluconate dehydrogenase [Escherichia coli K12] [2727, (srlD 6.0000e-18)] [-]
gi|1789170|gb|AAC75847.1| DNA-binding transcriptional activator [Escherichia coli K12] [2758, (srlR 2.0000e-15)] [+]
gi|1789208|gb|AAC75881.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli K12] [2792, (srlD 2.0000e-10)] [-]
gi|2367175|gb|AAC75940.1| predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain [Escherichia coli K12] [2850, (srlD 9.0000e-18)] [-]



Query: tdcABCDEFG (size: 7)


Expect = 1.4219e-13, size = 8, chromosome:U00096.faa
gi|87082212|gb|AAT48168.2| predicted transporter [Escherichia coli K12] [3050, (tdcC 1.0000e-24)] [-]
gi|48994925|gb|AAT48169.1| L-serine dehydratase 3 [Escherichia coli K12] [3051, (tdcG 0.0000e+00)] [-]
gi|87082213|gb|AAC76148.2| predicted L-PSP (mRNA) endoribonuclease [Escherichia coli K12] [3052, (tdcF 2.0000e-69)] [-]
gi|48994926|gb|AAT48170.1| pyruvate formate-lyase 4/2-ketobutyrate formate-lyase [Escherichia coli K12] [3053, (tdcE 0.0000e+00)] [-]
gi|1789503|gb|AAC76150.1| propionate kinase/acetate kinase C, anaerobic [Escherichia coli K12] [3054, (tdcD 0.0000e+00)] [-]
gi|1789504|gb|AAC76151.1| L-threonine/L-serine transporter [Escherichia coli K12] [3055, (tdcC 0.0000e+00)] [-]
gi|1789505|gb|AAC76152.1| catabolic threonine dehydratase, PLP-dependent [Escherichia coli K12] [3056, (tdcB 0.0000e+00)] [-]
gi|1789506|gb|AAC76153.1| DNA-binding transcriptional activator [Escherichia coli K12] [3057, (tdcA 0.0000e+00)] [-]


Expect = 6.0273e-06, size = 9, chromosome:U00096.faa
gi|1789440|gb|AAC76096.1| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [3002, (tdcA 5.0000e-08)] [-]
gi|87082212|gb|AAT48168.2| predicted transporter [Escherichia coli K12] [3050, (tdcC 1.0000e-24)] [-]
gi|48994925|gb|AAT48169.1| L-serine dehydratase 3 [Escherichia coli K12] [3051, (tdcG 0.0000e+00)] [-]
gi|87082213|gb|AAC76148.2| predicted L-PSP (mRNA) endoribonuclease [Escherichia coli K12] [3052, (tdcF 2.0000e-69)] [-]
gi|48994926|gb|AAT48170.1| pyruvate formate-lyase 4/2-ketobutyrate formate-lyase [Escherichia coli K12] [3053, (tdcE 0.0000e+00)] [-]
gi|1789503|gb|AAC76150.1| propionate kinase/acetate kinase C, anaerobic [Escherichia coli K12] [3054, (tdcD 0.0000e+00)] [-]
gi|1789504|gb|AAC76151.1| L-threonine/L-serine transporter [Escherichia coli K12] [3055, (tdcC 0.0000e+00)] [-]
gi|1789505|gb|AAC76152.1| catabolic threonine dehydratase, PLP-dependent [Escherichia coli K12] [3056, (tdcB 0.0000e+00)] [-]
gi|1789506|gb|AAC76153.1| DNA-binding transcriptional activator [Escherichia coli K12] [3057, (tdcA 0.0000e+00)] [-]



Query: ilvLG_1G_2MEDA (size: 6)


Expect = 3.9266e-12, size = 6, chromosome:U00096.faa
gi|87082328|gb|ABD18708.1| acetolactate synthase II, large subunit, N-ter fragment (pseudogene) [Escherichia coli K12] [3691, (ilvG_1 0.0000e+00)] [+]
gi|87082329|gb|ABD18709.1| acetolactate synthase II, large subunit, C-ter fragment (pseudogene) [Escherichia coli K12] [3692, (ilvG_2 0.0000e+00)] [+]
gi|1790204|gb|AAC77489.1| acetolactate synthase II, small subunit [Escherichia coli K12] [3693, (ilvM 8.0000e-45)] [+]
gi|48994963|gb|AAT48207.1| branched-chain amino-acid aminotransferase [Escherichia coli K12] [3694, (ilvE 0.0000e+00)] [+]
gi|48994964|gb|AAT48208.1| dihydroxyacid dehydratase [Escherichia coli K12] [3695, (ilvD 0.0000e+00)] [+]
gi|1790207|gb|AAC77492.1| threonine deaminase [Escherichia coli K12] [3696, (ilvA 0.0000e+00)] [+]



Query: agaSYBCDI (size: 6)


Expect = 1.7209e-16, size = 8, chromosome:U00096.faa
gi|87082217|gb|AAC76167.2| N-acetylgalactosamine-specific enzyme IIB component of PTS [Escherichia coli K12] [3070, (agaB 9.0000e-30)] [+]
gi|1789522|gb|AAC76168.1| N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene) [Escherichia coli K12] [3071, (agaC 1.0000e-23)] [+]
gi|1789525|gb|AAC76170.1| tagatose-6-phosphate ketose/aldose isomerase [Escherichia coli K12] [3073, (agaS 0.0000e+00)] [+]
gi|1789526|gb|AAC76171.1| tagatose 6-phosphate aldolase 1, kbaY subunit [Escherichia coli K12] [3074, (kbaY 0.0000e+00)] [+]
gi|1789527|gb|AAC76172.1| N-acetylgalactosamine-specific enzyme IIB component of PTS [Escherichia coli K12] [3075, (agaB 5.0000e-78)] [+]
gi|1789528|gb|AAC76173.1| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escherichia coli K12] [3076, (agaC 0.0000e+00)] [+]
gi|1789529|gb|AAC76174.1| N-acetylgalactosamine-specific enzyme IID component of PTS [Escherichia coli K12] [3077, (agaD 0.0000e+00)] [+]
gi|1789530|gb|AAC76175.1| galactosamine-6-phosphate isomerase [Escherichia coli K12] [3078, (agaI 0.0000e+00)] [+]



Query: caiTABCDE (size: 6)


Expect = 1.8473e-10, size = 6, chromosome:U00096.faa
gi|87081681|gb|AAC73146.2| predicted acyl transferase [Escherichia coli K12] [35, (caiE 0.0000e+00)] [-]
gi|1786220|gb|AAC73147.1| crotonobetainyl CoA hydratase [Escherichia coli K12] [36, (caiD 0.0000e+00)] [-]
gi|1786221|gb|AAC73148.1| predicted crotonobetaine CoA ligase:carnitine CoA ligase [Escherichia coli K12] [37, (caiC 0.0000e+00)] [-]
gi|1786222|gb|AAC73149.1| crotonobetainyl CoA:carnitine CoA transferase [Escherichia coli K12] [38, (caiB 0.0000e+00)] [-]
gi|1786223|gb|AAC73150.1| crotonobetaine reductase subunit II, FAD-binding [Escherichia coli K12] [39, (caiA 0.0000e+00)] [-]
gi|1786224|gb|AAC73151.1| predicted transporter [Escherichia coli K12] [40, (caiT 0.0000e+00)] [-]



Query: chbBCARFG (size: 6)


Expect = 4.1188e-14, size = 6, chromosome:U00096.faa
gi|1788028|gb|AAC74803.1| conserved protein [Escherichia coli K12] [1712, (chbG 0.0000e+00)] [-]
gi|1788029|gb|AAC74804.1| cryptic phospho-beta-glucosidase, NAD(P)-binding [Escherichia coli K12] [1713, (chbF 0.0000e+00)] [-]
gi|1788030|gb|AAC74805.1| DNA-binding transcriptional dual regulator [Escherichia coli K12] [1714, (chbR 0.0000e+00)] [-]
gi|1788031|gb|AAC74806.1| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Escherichia coli K12] [1715, (chbA 8.0000e-60)] [-]
gi|1788032|gb|AAC74807.1| N,N'-diacetylchitobiose-specific enzyme IIC component of PTS [Escherichia coli K12] [1716, (chbC 0.0000e+00)] [-]
gi|1788034|gb|AAC74808.1| N,N'-diacetylchitobiose-specific enzyme IIB component of PTS [Escherichia coli K12] [1717, (chbB 1.0000e-48)] [-]



Query: ddpXABCDF (size: 6)


Expect = 5.4944e-07, size = 6, chromosome:U00096.faa
gi|1787758|gb|AAC74556.1| D-ala-D-ala transporter subunit [Escherichia coli K12] [1462, (ddpD 7.0000e-45) (ddpF 0.0000e+00)] [-]
gi|1787759|gb|AAC74557.1| D-ala-D-ala transporter subunit [Escherichia coli K12] [1463, (ddpD 0.0000e+00) (ddpF 7.0000e-45)] [-]
gi|1787760|gb|AAC74558.1| D-ala-D-ala transporter subunit [Escherichia coli K12] [1464, (ddpC 0.0000e+00)] [-]
gi|1787761|gb|AAC74559.1| D-ala-D-ala transporter subunit [Escherichia coli K12] [1465, (ddpB 0.0000e+00)] [-]
gi|1787762|gb|AAC74560.1| D-ala-D-a la transporter subunit [Escherichia coli K12] [1466, (ddpA 0.0000e+00)] [-]
gi|1787763|gb|AAC74561.1| D-ala-D-ala dipeptidase, Zn-dependent [Escherichia coli K12] [1467, (ddpX 0.0000e+00)] [-]



Query: fliFGHIJK (size: 6)


Expect = 4.1188e-14, size = 6, chromosome:U00096.faa
gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli K12] [1914, (fliF 0.0000e+00)] [+]
gi|1788249|gb|AAC75006.1| flagellar motor switching and energizing component [Escherichia coli K12] [1915, (fliG 0.0000e+00)] [+]
gi|87082004|gb|AAC75007.2| flagellar biosynthesis protein [Escherichia coli K12] [1916, (fliH 0.0000e+00)] [+]
gi|1788251|gb|AAC75008.1| flagellum-specific ATP synthase [Escherichia coli K12] [1917, (fliI 0.0000e+00)] [+]
gi|1788252|gb|AAC75009.1| flagellar protein [Escherichia coli K12] [1918, (fliJ 1.0000e-81)] [+]
gi|1788253|gb|AAC75010.1| flagellar hook-length control protein [Escherichia coli K12] [1919, (fliK 0.0000e+00)] [+]



Query: gatYZABCD (size: 6)


Expect = 6.5998e-11, size = 6, chromosome:U00096.faa
gi|1788407|gb|AAC75152.1| galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding [Escherichia coli K12] [2062, (gatD 0.0000e+00)] [-]
gi|1788408|gb|AAC75153.1| galactitol-specific enzyme IIC component of PTS [Escherichia coli K12] [2063, (gatC 0.0000e+00)] [-]
gi|1788409|gb|AAC75154.1| galactitol-specific enzyme IIB component of PTS [Escherichia coli K12] [2064, (gatB 1.0000e-50)] [-]
gi|1788410|gb|AAC75155.1| galactitol-specific enzyme IIA component of PTS [Escherichia coli K12] [2065, (gatA 5.0000e-83)] [-]
gi|1788411|gb|AAC75156.1| D-tagatose 1,6-bisphosphate aldolase 2, subunit [Escherichia coli K12] [2066, (gatZ 0.0000e+00)] [-]
gi|87082041|gb|AAC75157.2| D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit [Escherichia coli K12] [2067, (gatY 0.0000e+00)] [-]



Query: glcDEFGBA (size: 6)


Expect = 2.2654e-13, size = 6, chromosome:U00096.faa
gi|1789347|gb|AAC76011.1| glycolate transporter [Escherichia coli K12] [2919, (glcA 0.0000e+00)] [-]
gi|1789348|gb|AAC76012.1| malate synthase G [Escherichia coli K12] [2920, (glcB 0.0000e+00)] [-]
gi|1789349|gb|AAC76013.1| conserved protein [Escherichia coli K12] [2921, (glcG 6.0000e-62)] [-]
gi|48994913|gb|AAT48157.1| glycolate oxidase iron-sulfur subunit [Escherichia coli K12] [2922, (glcF 0.0000e+00)] [-]
gi|48994914|gb|AAT48158.1| glycolate oxidase FAD binding subunit [Escherichia coli K12] [2923, (glcE 0.0000e+00)] [-]
gi|1789351|gb|AAC76015.1| glycolate oxidase subunit, FAD-linked [Escherichia coli K12] [2924, (glcD 0.0000e+00)] [-]



Query: hyaABCDEF (size: 6)


Expect = 2.2654e-13, size = 6, chromosome:U00096.faa
gi|1787206|gb|AAC74057.1| hydrogenase 1, small subunit [Escherichia coli K12] [943, (hyaA 0.0000e+00)] [+]
gi|1787207|gb|AAC74058.1| hydrogenase 1, large subunit [Escherichia coli K12] [944, (hyaB 0.0000e+00)] [+]
gi|1787208|gb|AAC74059.1| hydrogenase 1, b-type cytochrome subunit [Escherichia coli K12] [945, (hyaC 0.0000e+00)] [+]
gi|1787209|gb|AAC74060.1| protein involved in processing of HyaA and HyaB proteins [Escherichia coli K12] [946, (hyaD 2.0000e-98)] [+]
gi|1787210|gb|AAC74061.1| protein involved in processing of HyaA and HyaB proteins [Escherichia coli K12] [947, (hyaE 1.0000e-75)] [+]
gi|1787211|gb|AAC74062.1| protein involved in nickel incorporation into hydrogenase-1 proteins [Escherichia coli K12] [948, (hyaF 0.0000e+00)] [+]



Query: hypABCDE-fhlA (size: 6)


Expect = 1.9005e-11, size = 6, chromosome:U00096.faa
gi|1789081|gb|AAC75768.1| protein involved in nickel insertion into hydrogenases 3 [Escherichia coli K12] [2680, (hypA 1.0000e-66)] [+]
gi|1789082|gb|AAC75769.1| GTP hydrolase involved in nickel liganding into hydrogenases [Escherichia coli K12] [2681, (hypB 0.0000e+00)] [+]
gi|1789083|gb|AAC75770.1| protein required for maturation of hydrogenases 1 and 3 [Escherichia coli K12] [2682, (hypC 3.0000e-49)] [+]
gi|1789084|gb|AAC75771.1| protein required for maturation of hydrogenases [Escherichia coli K12] [2683, (hypD 0.0000e+00)] [+]
gi|1789085|gb|AAC75772.1| carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein [Escherichia coli K12] [2684, (hypE 0.0000e+00)] [+]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (fhlA 0.0000e+00)] [+]


Expect = 1.4552e-08, size = 7, chromosome:U00096.faa
gi|87082152|gb|AAC75751.2| DNA-binding transcriptional activator [Escherichia coli K12] [2663, (fhlA 2.0000e-68)] [-]
gi|1789081|gb|AAC75768.1| protein involved in nickel insertion into hydrogenases 3 [Escherichia coli K12] [2680, (hypA 1.0000e-66)] [+]
gi|1789082|gb|AAC75769.1| GTP hydrolase involved in nickel liganding into hydrogenases [Escherichia coli K12] [2681, (hypB 0.0000e+00)] [+]
gi|1789083|gb|AAC75770.1| protein required for maturation of hydrogenases 1 and 3 [Escherichia coli K12] [2682, (hypC 3.0000e-49)] [+]
gi|1789084|gb|AAC75771.1| protein required for maturation of hydrogenases [Escherichia coli K12] [2683, (hypD 0.0000e+00)] [+]
gi|1789085|gb|AAC75772.1| carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein [Escherichia coli K12] [2684, (hypE 0.0000e+00)] [+]
gi|1789087|gb|AAC75773.1| DNA-binding transcriptional activator [Escherichia coli K12] [2685, (fhlA 0.0000e+00)] [+]



Query: imp-surA-pdxA-rsmA-apaGH (size: 6)


Expect = 1.3729e-14, size = 6, chromosome:U00096.faa
gi|1786234|gb|AAC73160.1| diadenosine tetraphosphatase [Escherichia coli K12] [49, (apaH 0.0000e+00)] [-]
gi|1786235|gb|AAC73161.1| protein associated with Co2+ and Mg2+ efflux [Escherichia coli K12] [50, (apaG 2.0000e-62)] [-]
gi|1786236|gb|AAC73162.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli K12] [51, (ksgA 0.0000e+00)] [-]
gi|1786237|gb|AAC73163.1| 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent [Escherichia coli K12] [52, (pdxA 0.0000e+00)] [-]
gi|1786238|gb|AAC73164.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli K12] [53, (surA 0.0000e+00)] [-]
gi|1786239|gb|AAC73165.1| exported protein required for envelope biosynthesis and integrity [Escherichia coli K12] [54, (imp 0.0000e+00)] [-]



Query: lsrACDBFG (size: 6)


Expect = 3.0529e-07, size = 6, chromosome:U00096.faa
gi|1787792|gb|AAC74586.1| fused AI2 transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [1491, (lsrA 0.0000e+00)] [+]
gi|1787793|gb|AAC74587.1| AI2 transporter [Escherichia coli K12] [1492, (lsrC 0.0000e+00) (lsrD 1.0000e-12)] [+]
gi|1787794|gb|AAC74588.1| AI2 transporter [Escherichia coli K12] [1493, (lsrC 5.0000e-15) (lsrD 0.0000e+00)] [+]
gi|1787795|gb|AAC74589.1| AI2 transporter [Escherichia coli K12] [1494, (lsrB 0.0000e+00)] [+]
gi|1787796|gb|AAC74590.1| putative autoinducer-2 (AI-2) aldolase [Escherichia coli K12] [1495, (lsrF 0.0000e+00)] [+]
gi|1787797|gb|AAC74591.1| autoinducer-2 (AI-2) modifying protein LsrG [Escherichia coli K12] [1496, (lsrG 2.0000e-53)] [+]



Query: mdtABCD-baeSR (size: 6)


Expect = 2.7226e-08, size = 6, chromosome:U00096.faa
gi|87082036|gb|AAC75135.2| multidrug efflux system, subunit A [Escherichia coli K12] [2047, (mdtA 0.0000e+00)] [+]
gi|1788390|gb|AAC75136.1| multidrug efflux system, subunit B [Escherichia coli K12] [2048, (mdtB 0.0000e+00) (mdtC 0.0000e+00)] [+]
gi|1788391|gb|AAC75137.1| multidrug efflux system, subunit C [Escherichia coli K12] [2049, (mdtB 0.0000e+00) (mdtC 0.0000e+00)] [+]
gi|1788392|gb|AAC75138.1| multidrug efflux system protein [Escherichia coli K12] [2050, (mdtD 0.0000e+00)] [+]
gi|1788393|gb|AAC75139.1| sensory histidine kinase in two-component regulatory system with BaeR [Escherichia coli K12] [2051, (baeS 0.0000e+00)] [+]
gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli K12] [2052, (baeR 0.0000e+00)] [+]



Query: menFD-yfbB-menBCE (size: 6)


Expect = 3.6586e-11, size = 6, chromosome:U00096.faa
gi|1788595|gb|AAC75320.1| o-succinylbenzoate-CoA ligase [Escherichia coli K12] [2233, (menE 0.0000e+00)] [-]
gi|1788596|gb|AAC75321.1| o-succinylbenzoyl-CoA synthase [Escherichia coli K12] [2234, (menC 0.0000e+00)] [-]
gi|1788597|gb|AAC75322.1| dihydroxynaphthoic acid synthetase [Escherichia coli K12] [2235, (menB 0.0000e+00)] [-]
gi|1788598|gb|AAC75323.1| predicted peptidase [Escherichia coli K12] [2236, (yfbB 0.0000e+00)] [-]
gi|1788599|gb|AAC75324.1| bifunctional 2-oxoglutarate decarboxylase/ SHCHC synthase [Escherichia coli K12] [2237, (menD 0.0000e+00)] [-]
gi|87082077|gb|AAC75325.2| isochorismate synthase 2 [Escherichia coli K12] [2238, (menF 0.0000e+00)] [-]



Query: mhpABCDFE (size: 6)


Expect = 1.3729e-14, size = 6, chromosome:U00096.faa
gi|1786543|gb|AAC73450.1| 3-(3-hydroxyphenyl)propionate hydroxylase [Escherichia coli K12] [336, (mhpA 0.0000e+00)] [+]
gi|1786544|gb|AAC73451.1| 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [Escherichia coli K12] [337, (mhpB 0.0000e+00)] [+]
gi|87081721|gb|AAC73452.2| 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase [Escherichia coli K12] [338, (mhpC 0.0000e+00)] [+]
gi|87081722|gb|AAC73453.2| 2-keto-4-pentenoate hydratase [Escherichia coli K12] [339, (mhpD 0.0000e+00)] [+]
gi|1786547|gb|AAC73454.1| acetaldehyde-CoA dehydrogenase II, NAD-binding [Escherichia coli K12] [340, (mhpF 0.0000e+00)] [+]
gi|1786548|gb|AAC73455.1| 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I [Escherichia coli K12] [341, (mhpE 0.0000e+00)] [+]



Query: nikABCDER (size: 6)


Expect = 5.8451e-07, size = 6, chromosome:U00096.faa
gi|1789887|gb|AAC76501.1| nickel transporter subunit [Escherichia coli K12] [3401, (nikA 0.0000e+00)] [+]
gi|1789888|gb|AAC76502.1| nickel transporter subunit [Escherichia coli K12] [3402, (nikB 0.0000e+00)] [+]
gi|1789889|gb|AAC76503.1| nickel transporter subunit [Escherichia coli K12] [3403, (nikC 0.0000e+00)] [+]
gi|1789890|gb|AAC76504.1| nickel transporter subunit [Escherichia coli K12] [3404, (nikD 0.0000e+00) (nikE 9.0000e-24)] [+]
gi|1789891|gb|AAC76505.1| nickel transporter subunit [Escherichia coli K12] [3405, (nikD 9.0000e-24) (nikE 0.0000e+00)] [+]
gi|1789892|gb|AAC76506.1| DNA-binding transcriptional repressor, Ni-binding [Escherichia coli K12] [3406, (nikR 3.0000e-65)] [+]


Expect = 1.5741e-06, size = 16, chromosome:U00096.faa
gi|87082267|gb|AAC76475.2| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3375, (nikD 4.0000e-11) (nikE 2.0000e-26)] [-]
gi|87082268|gb|AAC76479.2| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3379, (nikD 6.0000e-09) (nikE 2.0000e-10)] [-]
gi|1789864|gb|AAC76480.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3380, (nikE 2.0000e-14)] [-]
gi|1789873|gb|AAC76488.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3388, (nikD 9.0000e-16) (nikE 4.0000e-25)] [-]
gi|1789887|gb|AAC76501.1| nickel transporter subunit [Escherichia coli K12] [3401, (nikA 0.0000e+00)] [+]
gi|1789888|gb|AAC76502.1| nickel transporter subunit [Escherichia coli K12] [3402, (nikB 0.0000e+00)] [+]
gi|1789889|gb|AAC76503.1| nickel transporter subunit [Escherichia coli K12] [3403, (nikC 0.0000e+00)] [+]
gi|1789890|gb|AAC76504.1| nickel transporter subunit [Escherichia coli K12] [3404, (nikD 0.0000e+00) (nikE 9.0000e-24)] [+]
gi|1789891|gb|AAC76505.1| nickel transporter subunit [Escherichia coli K12] [3405, (nikD 9.0000e-24) (nikE 0.0000e+00)] [+]
gi|1789892|gb|AAC76506.1| DNA-binding transcriptional repressor, Ni-binding [Escherichia coli K12] [3406, (nikR 3.0000e-65)] [+]
gi|48994943|gb|AAT48187.1| fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein [Escherichia coli K12] [3412, (nikD 4.0000e-14) (nikE 9.0000e-16)] [-]
gi|1789962|gb|AAC76565.1| dipeptide transporter [Escherichia coli K12] [3467, (nikD 7.0000e-29) (nikE 2.0000e-42)] [-]
gi|1789963|gb|AAC76566.1| dipeptide transporter [Escherichia coli K12] [3468, (nikD 6.0000e-38) (nikE 2.0000e-33)] [-]
gi|1789964|gb|AAC76567.1| dipeptide transporter [Escherichia coli K12] [3469, (nikC 5.0000e-39)] [-]
gi|1789965|gb|AAC76568.1| dipeptide transporter [Escherichia coli K12] [3470, (nikB 5.0000e-54)] [-]
gi|1789966|gb|AAC76569.1| dipeptide transporter [Escherichia coli K12] [3471, (nikA 3.0000e-38)] [-]


Expect = 5.6542e-06, size = 17, chromosome:U00096.faa
gi|87082267|gb|AAC76475.2| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3375, (nikD 4.0000e-11) (nikE 2.0000e-26)] [-]
gi|87082268|gb|AAC76479.2| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3379, (nikD 6.0000e-09) (nikE 2.0000e-10)] [-]
gi|1789864|gb|AAC76480.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3380, (nikE 2.0000e-14)] [-]
gi|1789873|gb|AAC76488.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3388, (nikD 9.0000e-16) (nikE 4.0000e-25)] [-]
gi|1789887|gb|AAC76501.1| nickel transporter subunit [Escherichia coli K12] [3401, (nikA 0.0000e+00)] [+]
gi|1789888|gb|AAC76502.1| nickel transporter subunit [Escherichia coli K12] [3402, (nikB 0.0000e+00)] [+]
gi|1789889|gb|AAC76503.1| nickel transporter subunit [Escherichia coli K12] [3403, (nikC 0.0000e+00)] [+]
gi|1789890|gb|AAC76504.1| nickel transporter subunit [Escherichia coli K12] [3404, (nikD 0.0000e+00) (nikE 9.0000e-24)] [+]
gi|1789891|gb|AAC76505.1| nickel transporter subunit [Escherichia coli K12] [3405, (nikD 9.0000e-24) (nikE 0.0000e+00)] [+]
gi|1789892|gb|AAC76506.1| DNA-binding transcriptional repressor, Ni-binding [Escherichia coli K12] [3406, (nikR 3.0000e-65)] [+]
gi|48994943|gb|AAT48187.1| fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein [Escherichia coli K12] [3412, (nikD 4.0000e-14) (nikE 9.0000e-16)] [-]
gi|1789962|gb|AAC76565.1| dipeptide transporter [Escherichia coli K12] [3467, (nikD 7.0000e-29) (nikE 2.0000e-42)] [-]
gi|1789963|gb|AAC76566.1| dipeptide transporter [Escherichia coli K12] [3468, (nikD 6.0000e-38) (nikE 2.0000e-33)] [-]
gi|1789964|gb|AAC76567.1| dipeptide transporter [Escherichia coli K12] [3469, (nikC 5.0000e-39)] [-]
gi|1789965|gb|AAC76568.1| dipeptide transporter [Escherichia coli K12] [3470, (nikB 5.0000e-54)] [-]
gi|1789966|gb|AAC76569.1| dipeptide transporter [Escherichia coli K12] [3471, (nikA 3.0000e-38)] [-]
gi|1789991|gb|AAC76591.1| fused D-xylose transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [3495, (nikD 9.0000e-13) (nikE 2.0000e-16)] [+]



Query: rbsDACBKR (size: 6)


Expect = 1.3797e-06, size = 6, chromosome:U00096.faa
gi|87082327|gb|AAC76771.2| predicted cytoplasmic sugar-binding protein [Escherichia coli K12] [3679, (rbsD 1.0000e-66)] [+]
gi|1790190|gb|AAC76772.1| fused D-ribose transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [3680, (rbsA 0.0000e+00)] [+]
gi|1790191|gb|AAC76773.1| D-ribose transporter subunit [Escherichia coli K12] [3681, (rbsC 0.0000e+00)] [+]
gi|1790192|gb|AAC76774.1| D-ribose transporter subunit [Escherichia coli K12] [3682, (rbsB 0.0000e+00) (rbsR 2.0000e-16)] [+]
gi|1790193|gb|AAC76775.1| ribokinase [Escherichia coli K12] [3683, (rbsK 0.0000e+00)] [+]
gi|1790194|gb|AAC76776.1| DNA-binding transcriptional repressor of ribose metabolism [Escherichia coli K12] [3684, (rbsB 4.0000e-16) (rbsR 0.0000e+00)] [+]



Query: rplKAJL-rpoBC (size: 6)


Expect = 4.9034e-16, size = 6, chromosome:U00096.faa
gi|2367334|gb|AAC76957.1| 50S ribosomal subunit protein L11 [Escherichia coli K12] [3885, (rplK 7.0000e-68)] [+]
gi|1790416|gb|AAC76958.1| 50S ribosomal subunit protein L1 [Escherichia coli K12] [3886, (rplA 0.0000e+00)] [+]
gi|1790417|gb|AAC76959.1| 50S ribosomal subunit protein L10 [Escherichia coli K12] [3887, (rplJ 1.0000e-86)] [+]
gi|1790418|gb|AAC76960.1| 50S ribosomal subunit protein L7/L12 [Escherichia coli K12] [3888, (rplL 3.0000e-37)] [+]
gi|1790419|gb|AAC76961.1| RNA polymerase, beta subunit [Escherichia coli K12] [3889, (rpoB 0.0000e+00)] [+]
gi|2367335|gb|AAC76962.1| RNA polymerase, beta prime subunit [Escherichia coli K12] [3890, (rpoC 0.0000e+00)] [+]



Query: sufABCDSE (size: 6)


Expect = 2.4548e-08, size = 6, chromosome:U00096.faa
gi|1787969|gb|AAC74749.1| sulfur acceptor protein [Escherichia coli K12] [1657, (sufE 4.0000e-69)] [-]
gi|1787970|gb|AAC74750.1| selenocysteine lyase, PLP-dependent [Escherichia coli K12] [1658, (sufS 0.0000e+00)] [-]
gi|1787971|gb|AAC74751.1| component of SufBCD complex [Escherichia coli K12] [1659, (sufB 4.0000e-11) (sufD 0.0000e+00)] [-]
gi|1787972|gb|AAC74752.1| component of SufBCD complex, ATP-binding component of ABC superfamily [Escherichia coli K12] [1660, (sufC 0.0000e+00)] [-]
gi|87081955|gb|AAC74753.2| component of SufBCD complex [Escherichia coli K12] [1661, (sufB 0.0000e+00) (sufD 3.0000e-11)] [-]
gi|1787974|gb|AAC74754.1| Fe-S cluster assembly protein [Escherichia coli K12] [1662, (sufA 2.0000e-70)] [-]



Query: tar-tap-cheRBYZ (size: 6)


Expect = 4.9498e-11, size = 6, chromosome:U00096.faa
gi|1788190|gb|AAC74951.1| chemotaxis regulator, protein phosphatase for CheY [Escherichia coli K12] [1861, (cheZ 3.0000e-98)] [-]
gi|1788191|gb|AAC74952.1| chemotaxis regulator transmitting signal to flagellar motor component [Escherichia coli K12] [1862, (cheY 7.0000e-60)] [-]
gi|1788192|gb|AAC74953.1| fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA [Escherichia coli K12] [1863, (cheB 0.0000e+00)] [-]
gi|1788193|gb|AAC74954.1| chemotaxis regulator, protein-glutamate methyltransferase [Escherichia coli K12] [1864, (cheR 0.0000e+00)] [-]
gi|1788194|gb|AAC74955.1| methyl-accepting protein IV [Escherichia coli K12] [1865, (tap 0.0000e+00) (tar 1.0000e-82)] [-]
gi|1788195|gb|AAC74956.1| methyl-accepting chemotaxis protein II [Escherichia coli K12] [1866, (tap 4.0000e-94) (tar 0.0000e+00)] [-]



Query: thiCEFSGH (size: 6)


Expect = 1.3729e-14, size = 6, chromosome:U00096.faa
gi|1790423|gb|AAC76964.1| thiamin biosynthesis ThiGH complex subunit [Escherichia coli K12] [3892, (thiH 0.0000e+00)] [-]
gi|48994993|gb|AAC76965.2| thiamin biosynthesis ThiGH complex subunit [Escherichia coli K12] [3893, (thiG 0.0000e+00)] [-]
gi|48994994|gb|AAT48237.1| sulphur carrier protein [Escherichia coli K12] [3894, (thiS 2.0000e-33)] [-]
gi|87082356|gb|AAC76966.2| thiamin (thiazole moiety) biosynthesis protein [Escherichia coli K12] [3895, (thiF 0.0000e+00)] [-]
gi|1790426|gb|AAC76967.1| thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) [Escherichia coli K12] [3896, (thiE 0.0000e+00)] [-]
gi|1790427|gb|AAC76968.1| thiamin (pyrimidine moiety) biosynthesis protein [Escherichia coli K12] [3897, (thiC 0.0000e+00)] [-]



Query: ulaABCDEF (size: 6)


Expect = 2.4541e-12, size = 6, chromosome:U00096.faa
gi|87082388|gb|AAC77150.2| L-ascorbate-specific enzyme IIC component of PTS [Escherichia coli K12] [4091, (ulaA 0.0000e+00)] [+]
gi|1790638|gb|AAC77151.1| L-ascorbate-specific enzyme IIB component of PTS [Escherichia coli K12] [4092, (ulaB 3.0000e-54)] [+]
gi|2367359|gb|AAC77152.1| L-ascorbate-specific enzyme IIA component of PTS [Escherichia coli K12] [4093, (ulaC 2.0000e-85)] [+]
gi|1790640|gb|AAC77153.1| 3-keto-L-gulonate 6-phosphate decarboxylase [Escherichia coli K12] [4094, (ulaD 0.0000e+00)] [+]
gi|1790641|gb|AAC77154.1| L-xylulose 5-phosphate 3-epimerase [Escherichia coli K12] [4095, (ulaE 0.0000e+00)] [+]
gi|1790642|gb|AAC77155.1| L-ribulose 5-phosphate 4-epimerase [Escherichia coli K12] [4096, (ulaF 0.0000e+00)] [+]



Query: yhbG-rpoN-yhbH-ptsN-yhbJ-npr (size: 6)


Expect = 1.5913e-07, size = 6, chromosome:U00096.faa
gi|1789593|gb|AAC76233.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3136, (lptB 0.0000e+00)] [+]
gi|1789594|gb|AAC76234.1| RNA polymerase, sigma 54 (sigma N) factor [Escherichia coli K12] [3137, (rpoN 0.0000e+00)] [+]
gi|1789595|gb|AAC76235.1| predicted ribosome-associated, sigma 54 modulation protein [Escherichia coli K12] [3138, (hpf 2.0000e-50)] [+]
gi|1789597|gb|AAC76236.1| sugar-specific enzyme IIA component of PTS [Escherichia coli K12] [3139, (ptsN 1.0000e-88)] [+]
gi|1789598|gb|AAC76237.1| predicted protein with nucleoside triphosphate hydrolase domain [Escherichia coli K12] [3140, (yhbJ 0.0000e+00)] [+]
gi|1789599|gb|AAC76238.1| phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) [Escherichia coli K12] [3141, (npr 1.0000e-45)] [+]


Expect = 2.0394e-06, size = 7, chromosome:U00096.faa
gi|1789586|gb|AAC76227.1| predicted toluene transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3130, (lptB 1.0000e-24)] [-]
gi|1789593|gb|AAC76233.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3136, (lptB 0.0000e+00)] [+]
gi|1789594|gb|AAC76234.1| RNA polymerase, sigma 54 (sigma N) factor [Escherichia coli K12] [3137, (rpoN 0.0000e+00)] [+]
gi|1789595|gb|AAC76235.1| predicted ribosome-associated, sigma 54 modulation protein [Escherichia coli K12] [3138, (hpf 2.0000e-50)] [+]
gi|1789597|gb|AAC76236.1| sugar-specific enzyme IIA component of PTS [Escherichia coli K12] [3139, (ptsN 1.0000e-88)] [+]
gi|1789598|gb|AAC76237.1| predicted protein with nucleoside triphosphate hydrolase domain [Escherichia coli K12] [3140, (yhbJ 0.0000e+00)] [+]
gi|1789599|gb|AAC76238.1| phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) [Escherichia coli K12] [3141, (npr 1.0000e-45)] [+]



Query: trpLEDCBA (size: 5)


Expect = 4.4247e-11, size = 5, chromosome:U00096.faa
gi|1787514|gb|AAC74342.1| tryptophan synthase, alpha subunit [Escherichia coli K12] [1233, (trpA 0.0000e+00)] [-]
gi|1787515|gb|AAC74343.1| tryptophan synthase, beta subunit [Escherichia coli K12] [1234, (trpB 0.0000e+00)] [-]
gi|87081863|gb|AAC74344.2| fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase [Escherichia coli K12] [1235, (trpC 0.0000e+00)] [-]
gi|1787517|gb|AAC74345.1| fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase [Escherichia coli K12] [1236, (trpD 0.0000e+00)] [-]
gi|1787518|gb|AAC74346.1| component I of anthranilate synthase [Escherichia coli K12] [1237, (trpE 0.0000e+00)] [-]



Query: argT-hisJQMP (size: 5)



Query: astCADBE (size: 5)


Expect = 7.1458e-09, size = 5, chromosome:U00096.faa
gi|1788040|gb|AAC74814.1| succinylglutamate desuccinylase [Escherichia coli K12] [1723, (astE 0.0000e+00)] [-]
gi|1788041|gb|AAC74815.1| succinylarginine dihydrolase [Escherichia coli K12] [1724, (astB 0.0000e+00)] [-]
gi|1788042|gb|AAC74816.1| succinylglutamic semialdehyde dehydrogenase [Escherichia coli K12] [1725, (astD 0.0000e+00)] [-]
gi|1788043|gb|AAC74817.1| arginine succinyltransferase [Escherichia coli K12] [1726, (astA 0.0000e+00)] [-]
gi|1788044|gb|AAC74818.1| succinylornithine transaminase, PLP-dependent [Escherichia coli K12] [1727, (astC 0.0000e+00)] [-]



Query: csiD-ygaF-gabDTP (size: 5)


Expect = 1.5307e-07, size = 5, chromosome:U00096.faa
gi|87082147|gb|AAC75706.2| predicted protein [Escherichia coli K12] [2618, (csiD 0.0000e+00)] [+]
gi|87082148|gb|AAC75707.2| predicted enzyme [Escherichia coli K12] [2619, (ygaF 0.0000e+00)] [+]
gi|1789015|gb|AAC75708.1| succinate-semialdehyde dehydrogenase I, NADP-dependent [Escherichia coli K12] [2620, (gabD 0.0000e+00)] [+]
gi|1789016|gb|AAC75709.1| 4-aminobutyrate aminotransferase, PLP-dependent [Escherichia coli K12] [2621, (gabT 0.0000e+00)] [+]
gi|1789017|gb|AAC75710.1| gamma-aminobutyrate transporter [Escherichia coli K12] [2622, (gabP 0.0000e+00)] [+]



Query: cyoABCDE (size: 5)


Expect = 3.5116e-13, size = 5, chromosome:U00096.faa
gi|1786631|gb|AAC73531.1| protoheme IX farnesyltransferase [Escherichia coli K12] [416, (cyoE 0.0000e+00)] [-]
gi|1786632|gb|AAC73532.1| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli K12] [417, (cyoD 3.0000e-60)] [-]
gi|1786633|gb|AAC73533.1| cytochrome o ubiquinol oxidase subunit III [Escherichia coli K12] [418, (cyoC 0.0000e+00)] [-]
gi|1786634|gb|AAC73534.1| cytochrome o ubiquinol oxidase subunit I [Escherichia coli K12] [419, (cyoB 0.0000e+00)] [-]
gi|1786635|gb|AAC73535.1| cytochrome o ubiquinol oxidase subunit II [Escherichia coli K12] [420, (cyoA 0.0000e+00)] [-]



Query: entCEBA-ybdB (size: 5)


Expect = 4.1702e-08, size = 5, chromosome:U00096.faa
gi|1786809|gb|AAC73694.1| isochorismate synthase 1 [Escherichia coli K12] [583, (entC 0.0000e+00)] [+]
gi|1786810|gb|AAC73695.1| 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Escherichia coli K12] [584, (entE 0.0000e+00)] [+]
gi|1786811|gb|AAC73696.1| isochorismatase [Escherichia coli K12] [585, (entB 0.0000e+00)] [+]
gi|1786812|gb|AAC73697.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Escherichia coli K12] [586, (entA 0.0000e+00)] [+]
gi|1786813|gb|AAC73698.1| conserved protein [Escherichia coli K12] [587, (ybdB 5.0000e-71)] [+]


Expect = 2.0936e-07, size = 6, chromosome:U00096.faa
gi|1786801|gb|AAC73687.1| enterobactin synthase multienzyme complex component,  ATP-dependent [Escherichia coli K12] [576, (entE 4.0000e-24)] [+]
gi|1786809|gb|AAC73694.1| isochorismate synthase 1 [Escherichia coli K12] [583, (entC 0.0000e+00)] [+]
gi|1786810|gb|AAC73695.1| 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Escherichia coli K12] [584, (entE 0.0000e+00)] [+]
gi|1786811|gb|AAC73696.1| isochorismatase [Escherichia coli K12] [585, (entB 0.0000e+00)] [+]
gi|1786812|gb|AAC73697.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Escherichia coli K12] [586, (entA 0.0000e+00)] [+]
gi|1786813|gb|AAC73698.1| conserved protein [Escherichia coli K12] [587, (ybdB 5.0000e-71)] [+]



Query: frlABCDR (size: 5)


Expect = 3.4512e-08, size = 5, chromosome:U00096.faa
gi|87082250|gb|AAC76395.2| predicted fructoselysine transporter [Escherichia coli K12] [3298, (frlA 0.0000e+00)] [+]
gi|87082251|gb|AAC76396.2| fructoselysine-6-P-deglycase [Escherichia coli K12] [3299, (frlB 0.0000e+00)] [+]
gi|48994933|gb|AAT48177.1| predicted isomerase [Escherichia coli K12] [3300, (frlC 0.0000e+00)] [+]
gi|1789775|gb|AAC76399.1| fructoselysine 6-kinase [Escherichia coli K12] [3301, (frlD 0.0000e+00)] [+]
gi|87082252|gb|AAC76400.2| predicted DNA-binding transcriptional regulator [Escherichia coli K12] [3302, (frlR 0.0000e+00)] [+]



Query: fucPIKUR (size: 5)


Expect = 7.1458e-09, size = 5, chromosome:U00096.faa
gi|1789166|gb|AAC75843.1| L-fucose transporter [Escherichia coli K12] [2754, (fucP 0.0000e+00)] [+]
gi|1789167|gb|AAC75844.1| L-fucose isomerase [Escherichia coli K12] [2755, (fucI 0.0000e+00)] [+]
gi|1789168|gb|AAC75845.1| L-fuculokinase [Escherichia coli K12] [2756, (fucK 0.0000e+00)] [+]
gi|1789169|gb|AAC75846.1| L-fucose mutarotase [Escherichia coli K12] [2757, (fucU 2.0000e-76)] [+]
gi|1789170|gb|AAC75847.1| DNA-binding transcriptional activator [Escherichia coli K12] [2758, (fucR 0.0000e+00)] [+]



Query: garPLRK-rnpB (size: 4)


Expect = 1.4625e-06, size = 4, chromosome:U00096.faa
gi|1789512|gb|AAC76158.1| glycerate kinase I [Escherichia coli K12] [3061, (garK 0.0000e+00)] [-]
gi|87082216|gb|AAC76159.2| tartronate semialdehyde reductase [Escherichia coli K12] [3062, (garR 0.0000e+00)] [-]
gi|1789514|gb|AAC76160.1| alpha-dehydro-beta-deoxy-D-glucarate aldolase [Escherichia coli K12] [3063, (garL 0.0000e+00)] [-]
gi|1789515|gb|AAC76161.1| predicted (D)-galactarate transporter [Escherichia coli K12] [3064, (garP 0.0000e+00)] [-]



Query: hcaEFCBD (size: 5)


Expect = 4.0833e-09, size = 5, chromosome:U00096.faa
gi|1788888|gb|AAC75591.1| 3-phenylpropionate dioxygenase, large (alpha) subunit [Escherichia coli K12] [2507, (hcaE 0.0000e+00)] [+]
gi|1788889|gb|AAC75592.1| 3-phenylpropionate dioxygenase, small (beta) subunit [Escherichia coli K12] [2508, (hcaF 1.0000e-98)] [+]
gi|1788890|gb|AAC75593.1| 3-phenylpropionate dioxygenase, predicted ferredoxin subunit [Escherichia coli K12] [2509, (hcaC 1.0000e-60)] [+]
gi|1788891|gb|AAC75594.1| 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase [Escherichia coli K12] [2510, (hcaB 0.0000e+00)] [+]
gi|1788892|gb|AAC75595.1| phenylpropionate dioxygenase, ferredoxin reductase subunit [Escherichia coli K12] [2511, (hcaD 0.0000e+00)] [+]



Query: leuLABCD (size: 5)


Expect = 4.4247e-11, size = 5, chromosome:U00096.faa
gi|1786258|gb|AAC73182.1| 3-isopropylmalate isomerase subunit [Escherichia coli K12] [71, (leuD 0.0000e+00)] [-]
gi|1786259|gb|AAC73183.1| 3-isopropylmalate isomerase subunit, dehydratase component [Escherichia coli K12] [72, (leuC 0.0000e+00)] [-]
gi|87081683|gb|AAC73184.2| 3-isopropylmalate dehydrogenase [Escherichia coli K12] [73, (leuB 0.0000e+00)] [-]
gi|1786261|gb|AAC73185.1| 2-isopropylmalate synthase [Escherichia coli K12] [74, (leuA 0.0000e+00)] [-]
gi|1786263|gb|AAC73186.1| leu operon leader peptide [Escherichia coli K12] [75, (leuL 2.0000e-10)] [-]


Expect = 3.2771e-07, size = 6, chromosome:U00096.faa
gi|1786258|gb|AAC73182.1| 3-isopropylmalate isomerase subunit [Escherichia coli K12] [71, (leuD 0.0000e+00)] [-]
gi|1786259|gb|AAC73183.1| 3-isopropylmalate isomerase subunit, dehydratase component [Escherichia coli K12] [72, (leuC 0.0000e+00)] [-]
gi|87081683|gb|AAC73184.2| 3-isopropylmalate dehydrogenase [Escherichia coli K12] [73, (leuB 0.0000e+00)] [-]
gi|1786261|gb|AAC73185.1| 2-isopropylmalate synthase [Escherichia coli K12] [74, (leuA 0.0000e+00)] [-]
gi|1786263|gb|AAC73186.1| leu operon leader peptide [Escherichia coli K12] [75, (leuL 2.0000e-10)] [-]
gi|2367097|gb|AAC73229.1| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Escherichia coli K12] [115, (leuC 5.0000e-16)] [+]



Query: livKHMGF (size: 5)


Expect = 1.1838e-07, size = 8, chromosome:U00096.faa
gi|87082267|gb|AAC76475.2| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3375, (livF 3.0000e-19) (livG 2.0000e-19)] [-]
gi|87082268|gb|AAC76479.2| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3379, (livF 0.0000e+00) (livG 7.0000e-26)] [-]
gi|1789864|gb|AAC76480.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3380, (livF 6.0000e-26) (livG 0.0000e+00)] [-]
gi|1789865|gb|AAC76481.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3381, (livM 0.0000e+00)] [-]
gi|1789866|gb|AAC76482.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3382, (livH 0.0000e+00)] [-]
gi|1789867|gb|AAC76483.1| leucine transporter subunit [Escherichia coli K12] [3383, (livK 0.0000e+00)] [-]
gi|48994941|gb|AAT48185.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3385, (livK 0.0000e+00)] [-]
gi|1789873|gb|AAC76488.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3388, (livF 3.0000e-22) (livG 1.0000e-18)] [-]


Expect = 1.5714e-07, size = 11, chromosome:U00096.faa
gi|87082267|gb|AAC76475.2| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3375, (livF 3.0000e-19) (livG 2.0000e-19)] [-]
gi|87082268|gb|AAC76479.2| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3379, (livF 0.0000e+00) (livG 7.0000e-26)] [-]
gi|1789864|gb|AAC76480.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3380, (livF 6.0000e-26) (livG 0.0000e+00)] [-]
gi|1789865|gb|AAC76481.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3381, (livM 0.0000e+00)] [-]
gi|1789866|gb|AAC76482.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3382, (livH 0.0000e+00)] [-]
gi|1789867|gb|AAC76483.1| leucine transporter subunit [Escherichia coli K12] [3383, (livK 0.0000e+00)] [-]
gi|48994941|gb|AAT48185.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3385, (livK 0.0000e+00)] [-]
gi|1789873|gb|AAC76488.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3388, (livF 3.0000e-22) (livG 1.0000e-18)] [-]
gi|1789890|gb|AAC76504.1| nickel transporter subunit [Escherichia coli K12] [3404, (livF 5.0000e-09)] [+]
gi|1789891|gb|AAC76505.1| nickel transporter subunit [Escherichia coli K12] [3405, (livF 1.0000e-10) (livG 2.0000e-14)] [+]
gi|48994943|gb|AAT48187.1| fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein [Escherichia coli K12] [3412, (livF 4.0000e-18) (livG 7.0000e-21)] [-]



Query: moaABCDE (size: 5)


Expect = 2.1070e-12, size = 5, chromosome:U00096.faa
gi|1786999|gb|AAC73868.1| molybdopterin biosynthesis protein A [Escherichia coli K12] [754, (moaA 0.0000e+00)] [+]
gi|1787000|gb|AAC73869.1| molybdopterin biosynthesis protein B [Escherichia coli K12] [755, (moaB 4.0000e-95)] [+]
gi|1787001|gb|AAC73870.1| molybdopterin biosynthesis, protein C [Escherichia coli K12] [756, (moaC 4.0000e-88)] [+]
gi|1787002|gb|AAC73871.1| molybdopterin synthase, small subunit [Escherichia coli K12] [757, (moaD 3.0000e-42)] [+]
gi|1787003|gb|AAC73872.1| molybdopterin synthase, large subunit [Escherichia coli K12] [758, (moaE 4.0000e-87)] [+]



Query: mreBCD-yhdE-rng (size: 5)


Expect = 8.8493e-11, size = 5, chromosome:U00096.faa
gi|87082235|gb|AAC76279.2| ribonuclease G [Escherichia coli K12] [3182, (rng 0.0000e+00)] [-]
gi|1789646|gb|AAC76280.1| conserved protein [Escherichia coli K12] [3183, (yhdE 0.0000e+00)] [-]
gi|1789647|gb|AAC76281.1| cell wall structural complex MreBCD transmembrane component MreD [Escherichia coli K12] [3184, (mreD 3.0000e-83)] [-]
gi|1789648|gb|AAC76282.1| cell wall structural complex MreBCD transmembrane component MreC [Escherichia coli K12] [3185, (mreC 0.0000e+00)] [-]
gi|87082236|gb|AAC76283.2| cell wall structural complex MreBCD, actin-like component MreB [Escherichia coli K12] [3186, (mreB 0.0000e+00)] [-]



Query: nanATEK-yhcH (size: 5)


Expect = 2.8349e-08, size = 5, chromosome:U00096.faa
gi|1789615|gb|AAC76253.1| conserved protein [Escherichia coli K12] [3157, (yhcH 9.0000e-80)] [-]
gi|87082230|gb|AAC76254.2| predicted N-acetylmannosamine kinase [Escherichia coli K12] [3158, (nanK 0.0000e+00)] [-]
gi|1789617|gb|AAC76255.1| predicted N-acetylmannosamine-6-P epimerase [Escherichia coli K12] [3159, (nanE 0.0000e+00)] [-]
gi|87082231|gb|AAC76256.2| sialic acid transporter [Escherichia coli K12] [3160, (nanT 0.0000e+00)] [-]
gi|1789620|gb|AAC76257.1| N-acetylneuraminate lyase [Escherichia coli K12] [3161, (nanA 0.0000e+00)] [-]



Query: pspABCDE (size: 5)


Expect = 3.5116e-13, size = 5, chromosome:U00096.faa
gi|2367118|gb|AAC74386.1| regulatory protein for phage-shock-protein operon [Escherichia coli K12] [1279, (pspA 0.0000e+00)] [+]
gi|1787563|gb|AAC74387.1| DNA-binding transcriptional regulator of psp operon [Escherichia coli K12] [1280, (pspB 2.0000e-38)] [+]
gi|1787564|gb|AAC74388.1| DNA-binding transcriptional activator [Escherichia coli K12] [1281, (pspC 3.0000e-63)] [+]
gi|1787565|gb|AAC74389.1| peripheral inner membrane phage-shock protein [Escherichia coli K12] [1282, (pspD 5.0000e-37)] [+]
gi|1787567|gb|AAC74390.1| thiosulfate:cyanide sulfurtransferase (rhodanese) [Escherichia coli K12] [1283, (pspE 1.0000e-56)] [+]



Query: pstSCAB-phoU (size: 5)


Expect = 3.9466e-06, size = 5, chromosome:U00096.faa
gi|1790161|gb|AAC76747.1| negative regulator of PhoR/PhoB two-component regulator [Escherichia coli K12] [3655, (phoU 0.0000e+00)] [-]
gi|1790162|gb|AAC76748.1| phosphate transporter subunit [Escherichia coli K12] [3656, (pstB 0.0000e+00)] [-]
gi|1790163|gb|AAC76749.1| phosphate transporter subunit [Escherichia coli K12] [3657, (pstA 0.0000e+00)] [-]
gi|1790164|gb|AAC76750.1| phosphate transporter subunit [Escherichia coli K12] [3658, (pstA 1.0000e-09) (pstC 0.0000e+00)] [-]
gi|2367271|gb|AAC76751.1| phosphate transporter subunit [Escherichia coli K12] [3659, (pstS 0.0000e+00)] [-]



Query: rfbBDACX (size: 5)


Expect = 2.2654e-13, size = 6, chromosome:U00096.faa
gi|1788349|gb|AAC75098.1| predicted polisoprenol-linked O-antigen transporter [Escherichia coli K12] [2010, (rfbX 0.0000e+00)] [-]
gi|1788350|gb|AAC75099.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli K12] [2011, (rfbC 0.0000e+00)] [-]
gi|1788351|gb|AAC75100.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli K12] [2012, (rfbA 0.0000e+00)] [-]
gi|1788352|gb|AAC75101.1| dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase [Escherichia coli K12] [2013, (rfbD 0.0000e+00)] [-]
gi|1788353|gb|AAC75102.1| dTDP-glucose 4,6 dehydratase, NAD(P)-binding [Escherichia coli K12] [2014, (rfbB 0.0000e+00)] [-]
gi|1788355|gb|AAC75103.1| predicted subunit with GalU [Escherichia coli K12] [2015, (rfbA 1.0000e-12)] [-]


Expect = 5.0860e-12, size = 7, chromosome:U00096.faa
gi|1788349|gb|AAC75098.1| predicted polisoprenol-linked O-antigen transporter [Escherichia coli K12] [2010, (rfbX 0.0000e+00)] [-]
gi|1788350|gb|AAC75099.1| dTDP-4-deoxyrhamnose-3,5-epimerase [Escherichia coli K12] [2011, (rfbC 0.0000e+00)] [-]
gi|1788351|gb|AAC75100.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli K12] [2012, (rfbA 0.0000e+00)] [-]
gi|1788352|gb|AAC75101.1| dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase [Escherichia coli K12] [2013, (rfbD 0.0000e+00)] [-]
gi|1788353|gb|AAC75102.1| dTDP-glucose 4,6 dehydratase, NAD(P)-binding [Escherichia coli K12] [2014, (rfbB 0.0000e+00)] [-]
gi|1788355|gb|AAC75103.1| predicted subunit with GalU [Escherichia coli K12] [2015, (rfbA 1.0000e-12)] [-]
gi|1788366|gb|AAC75114.1| GDP-D-mannose dehydratase, NAD(P)-binding [Escherichia coli K12] [2026, (rfbB 1.0000e-11)] [-]



Query: ribF-ileS-lspA-fkpB-ispH (size: 5)


Expect = 1.9665e-11, size = 5, chromosome:U00096.faa
gi|1786208|gb|AAC73136.1| bifunctional riboflavin kinase/FAD synthetase [Escherichia coli K12] [25, (ribF 0.0000e+00)] [+]
gi|2367096|gb|AAC73137.1| isoleucyl-tRNA synthetase [Escherichia coli K12] [26, (ileS 0.0000e+00)] [+]
gi|1786210|gb|AAC73138.1| prolipoprotein signal peptidase (signal peptidase II) [Escherichia coli K12] [27, (lspA 2.0000e-85)] [+]
gi|1786211|gb|AAC73139.1| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherichia coli K12] [28, (fkpB 5.0000e-82)] [+]
gi|1786212|gb|AAC73140.1| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein [Escherichia coli K12] [29, (ispH 0.0000e+00)] [+]



Query: rnc-era-recO-pdxJ-acpS (size: 5)


Expect = 1.9665e-11, size = 5, chromosome:U00096.faa
gi|1788916|gb|AAC75616.1| holo-[acyl-carrier-protein] synthase 1 [Escherichia coli K12] [2532, (acpS 8.0000e-61)] [-]
gi|1788917|gb|AAC75617.1| pyridoxine 5'-phosphate synthase [Escherichia coli K12] [2533, (pdxJ 0.0000e+00)] [-]
gi|2367140|gb|AAC75618.1| gap repair protein [Escherichia coli K12] [2534, (recO 0.0000e+00)] [-]
gi|1788919|gb|AAC75619.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli K12] [2535, (era 0.0000e+00)] [-]
gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli K12] [2536, (rnc 0.0000e+00)] [-]


Expect = 4.8813e-07, size = 6, chromosome:U00096.faa
gi|87082120|gb|AAC75564.2| predicted GTP-binding protein [Escherichia coli K12] [2480, (era 6.0000e-11)] [-]
gi|1788916|gb|AAC75616.1| holo-[acyl-carrier-protein] synthase 1 [Escherichia coli K12] [2532, (acpS 8.0000e-61)] [-]
gi|1788917|gb|AAC75617.1| pyridoxine 5'-phosphate synthase [Escherichia coli K12] [2533, (pdxJ 0.0000e+00)] [-]
gi|2367140|gb|AAC75618.1| gap repair protein [Escherichia coli K12] [2534, (recO 0.0000e+00)] [-]
gi|1788919|gb|AAC75619.1| membrane-associated, 16S rRNA-binding GTPase [Escherichia coli K12] [2535, (era 0.0000e+00)] [-]
gi|1788920|gb|AAC75620.1| RNase III [Escherichia coli K12] [2536, (rnc 0.0000e+00)] [-]



Query: rpsMKD-rpoA-rplQ (size: 5)


Expect = 3.5116e-13, size = 5, chromosome:U00096.faa
gi|1789689|gb|AAC76319.1| 50S ribosomal subunit protein L17 [Escherichia coli K12] [3221, (rplQ 4.0000e-68)] [-]
gi|1789690|gb|AAC76320.1| RNA polymerase, alpha subunit [Escherichia coli K12] [3222, (rpoA 0.0000e+00)] [-]
gi|1789691|gb|AAC76321.1| 30S ribosomal subunit protein S4 [Escherichia coli K12] [3223, (rpsD 0.0000e+00)] [-]
gi|1789692|gb|AAC76322.1| 30S ribosomal subunit protein S11 [Escherichia coli K12] [3224, (rpsK 6.0000e-72)] [-]
gi|1789693|gb|AAC76323.1| 30S ribosomal subunit protein S13 [Escherichia coli K12] [3225, (rpsM 8.0000e-63)] [-]



Query: ugpBAECQ (size: 5)


Expect = 3.6188e-09, size = 7, chromosome:U00096.faa
gi|1789858|gb|AAC76474.1| glycerophosphodiester phosphodiesterase, cytosolic [Escherichia coli K12] [3374, (ugpQ 0.0000e+00)] [-]
gi|87082267|gb|AAC76475.2| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3375, (ugpC 0.0000e+00)] [-]
gi|1789860|gb|AAC76476.1| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3376, (ugpE 0.0000e+00)] [-]
gi|1789861|gb|AAC76477.1| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3377, (ugpA 0.0000e+00)] [-]
gi|1789862|gb|AAC76478.1| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3378, (ugpB 0.0000e+00)] [-]
gi|87082268|gb|AAC76479.2| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3379, (ugpC 6.0000e-19)] [-]
gi|1789864|gb|AAC76480.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3380, (ugpC 3.0000e-19)] [-]


Expect = 3.7309e-07, size = 11, chromosome:U00096.faa
gi|1789858|gb|AAC76474.1| glycerophosphodiester phosphodiesterase, cytosolic [Escherichia coli K12] [3374, (ugpQ 0.0000e+00)] [-]
gi|87082267|gb|AAC76475.2| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3375, (ugpC 0.0000e+00)] [-]
gi|1789860|gb|AAC76476.1| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3376, (ugpE 0.0000e+00)] [-]
gi|1789861|gb|AAC76477.1| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3377, (ugpA 0.0000e+00)] [-]
gi|1789862|gb|AAC76478.1| glycerol-3-phosphate transporter subunit [Escherichia coli K12] [3378, (ugpB 0.0000e+00)] [-]
gi|87082268|gb|AAC76479.2| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3379, (ugpC 6.0000e-19)] [-]
gi|1789864|gb|AAC76480.1| leucine/isoleucine/valine transporter subunit [Escherichia coli K12] [3380, (ugpC 3.0000e-19)] [-]
gi|1789873|gb|AAC76488.1| predicted transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [3388, (ugpC 7.0000e-28)] [-]
gi|1789890|gb|AAC76504.1| nickel transporter subunit [Escherichia coli K12] [3404, (ugpC 6.0000e-11)] [+]
gi|1789891|gb|AAC76505.1| nickel transporter subunit [Escherichia coli K12] [3405, (ugpC 2.0000e-26)] [+]
gi|48994943|gb|AAT48187.1| fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein [Escherichia coli K12] [3412, (ugpC 2.0000e-21)] [-]



Query: wza-wzb-wzc-wcaAB (size: 5)


Expect = 2.7812e-10, size = 5, chromosome:U00096.faa
gi|1788371|gb|AAC75119.1| predicted acyl transferase [Escherichia coli K12] [2031, (wcaB 1.0000e-92)] [-]
gi|1788372|gb|AAC75120.1| predicted glycosyl transferase [Escherichia coli K12] [2032, (wcaA 0.0000e+00)] [-]
gi|87082032|gb|AAC75121.2| protein-tyrosine kinase [Escherichia coli K12] [2033, (wzc 0.0000e+00)] [-]
gi|1788375|gb|AAC75122.1| protein-tyrosine phosphatase [Escherichia coli K12] [2034, (wzb 7.0000e-84)] [-]
gi|1788376|gb|AAC75123.1| lipoprotein required for capsular polysaccharide translocation through the outer membrane [Escherichia coli K12] [2035, (wza 0.0000e+00)] [-]



Query: ybgIJKL-nei (size: 5)


Expect = 3.5116e-13, size = 5, chromosome:U00096.faa
gi|1786928|gb|AAC73804.1| conserved metal-binding protein [Escherichia coli K12] [690, (ybgI 0.0000e+00)] [+]
gi|1786929|gb|AAC73805.1| predicted enzyme subunit [Escherichia coli K12] [691, (ybgJ 0.0000e+00)] [+]
gi|1786930|gb|AAC73806.1| predicted enzyme subunit [Escherichia coli K12] [692, (ybgK 0.0000e+00)] [+]
gi|1786931|gb|AAC73807.1| predicted lactam utilization protein [Escherichia coli K12] [693, (ybgL 0.0000e+00)] [+]
gi|1786932|gb|AAC73808.1| endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase [Escherichia coli K12] [694, (nei 0.0000e+00)] [+]



Query: ydiQRST-fadK (size: 5)


Expect = 5.4444e-09, size = 5, chromosome:U00096.faa
gi|2367123|gb|AAC74767.1| conserved protein [Escherichia coli K12] [1675, (ydiQ 0.0000e+00)] [+]
gi|1787990|gb|AAC74768.1| predicted electron transfer flavoprotein, FAD-binding [Escherichia coli K12] [1676, (ydiR 0.0000e+00)] [+]
gi|1787991|gb|AAC74769.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichia coli K12] [1677, (ydiS 0.0000e+00)] [+]
gi|1787992|gb|AAC74770.1| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli K12] [1678, (ydiT 3.0000e-57)] [+]
gi|1787993|gb|AAC74771.1| short chain acyl-CoA synthetase, anaerobic [Escherichia coli K12] [1679, (fadK 0.0000e+00)] [+]


Expect = 3.0224e-07, size = 5, chromosome:U00096.faa
gi|1786221|gb|AAC73148.1| predicted crotonobetaine CoA ligase:carnitine CoA ligase [Escherichia coli K12] [37, (fadK 2.0000e-44)] [-]
gi|87081682|gb|AAC73152.2| predicted electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain [Escherichia coli K12] [41, (ydiQ 2.0000e-71)] [+]
gi|1786226|gb|AAC73153.1| predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like [Escherichia coli K12] [42, (ydiR 4.0000e-73)] [+]
gi|1786227|gb|AAC73154.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichia coli K12] [43, (ydiS 0.0000e+00)] [+]
gi|1786228|gb|AAC73155.1| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli K12] [44, (ydiT 1.0000e-33)] [+]



Query: ynfEFGH-dmsD (size: 5)


Expect = 9.7713e-08, size = 5, chromosome:U00096.faa
gi|1787870|gb|AAC74659.1| oxidoreductase subunit [Escherichia coli K12] [1566, (ynfE 0.0000e+00) (ynfF 0.0000e+00)] [+]
gi|87081941|gb|AAC74660.2| oxidoreductase subunit [Escherichia coli K12] [1567, (ynfE 0.0000e+00) (ynfF 0.0000e+00)] [+]
gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli K12] [1568, (ynfG 0.0000e+00)] [+]
gi|1787873|gb|AAC74662.1| oxidoreductase, membrane subunit [Escherichia coli K12] [1569, (ynfH 0.0000e+00)] [+]
gi|87081942|gb|AAC74663.2| twin-argninine leader-binding protein for DmsA and TorA [Escherichia coli K12] [1570, (dmsD 0.0000e+00)] [+]



Query: agaZVWA (size: 4)


Expect = 1.1519e-12, size = 6, chromosome:U00096.faa
gi|1789520|gb|AAC76166.1| tagatose 6-phosphate aldolase 1, kbaZ subunit [Escherichia coli K12] [3069, (kbaZ 0.0000e+00)] [+]
gi|87082217|gb|AAC76167.2| N-acetylgalactosamine-specific enzyme IIB component of PTS [Escherichia coli K12] [3070, (agaV 4.0000e-87)] [+]
gi|1789522|gb|AAC76168.1| N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene) [Escherichia coli K12] [3071, (agaW 3.0000e-44)] [+]
gi|48994927|gb|AAT48171.1| predicted truncated N-acetylgalactosamine-6-phosphate deacetylase [Escherichia coli K12] [3072, (agaA 3.0000e-96)] [+]
gi|1789527|gb|AAC76172.1| N-acetylgalactosamine-specific enzyme IIB component of PTS [Escherichia coli K12] [3075, (agaV 6.0000e-36)] [+]
gi|1789528|gb|AAC76173.1| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escherichia coli K12] [3076, (agaW 1.0000e-09)] [+]



Query: artPIQM (size: 4)


Expect = 1.1941e-06, size = 14, chromosome:U00096.faa
gi|1787029|gb|AAC73896.1| glutamine transporter subunit [Escherichia coli K12] [782, (artP 9.0000e-49)] [-]
gi|1787030|gb|AAC73897.1| glutamine transporter subunit [Escherichia coli K12] [783, (artM 1.0000e-16) (artQ 3.0000e-19)] [-]
gi|1787031|gb|AAC73898.1| glutamine transporter subunit [Escherichia coli K12] [784, (artI 2.0000e-30)] [-]
gi|1787041|gb|AAC73907.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [793, (artP 8.0000e-08)] [+]
gi|1787051|gb|AAC73916.1| fused predicted peptide transport subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [802, (artP 6.0000e-25)] [+]
gi|87081791|gb|AAC73942.2| putrescine transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [828, (artP 5.0000e-29)] [+]
gi|1787085|gb|AAC73947.1| arginine transporter subunit [Escherichia coli K12] [833, (artI 4.0000e-93)] [-]
gi|1787086|gb|AAC73948.1| arginine transporter subunit [Escherichia coli K12] [834, (artM 0.0000e+00) (artQ 5.0000e-20)] [-]
gi|1787087|gb|AAC73949.1| arginine transporter subunit [Escherichia coli K12] [835, (artM 8.0000e-20) (artQ 0.0000e+00)] [-]
gi|1787088|gb|AAC73950.1| arginine transporter subunit [Escherichia coli K12] [836, (artI 0.0000e+00)] [-]
gi|1787089|gb|AAC73951.1| arginine transporter subunit [Escherichia coli K12] [837, (artP 0.0000e+00)] [-]
gi|1787105|gb|AAC73966.1| fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component [Escherichia coli K12] [852, (artP 9.0000e-34)] [+]
gi|1787112|gb|AAC73972.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [858, (artP 3.0000e-15)] [-]
gi|1787113|gb|AAC73973.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [859, (artP 2.0000e-12)] [-]


Expect = 1.2635e-06, size = 15, chromosome:U00096.faa
gi|87081782|gb|AAC73881.2| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [767, (artP 9.0000e-18)] [-]
gi|1787029|gb|AAC73896.1| glutamine transporter subunit [Escherichia coli K12] [782, (artP 9.0000e-49)] [-]
gi|1787030|gb|AAC73897.1| glutamine transporter subunit [Escherichia coli K12] [783, (artM 1.0000e-16) (artQ 3.0000e-19)] [-]
gi|1787031|gb|AAC73898.1| glutamine transporter subunit [Escherichia coli K12] [784, (artI 2.0000e-30)] [-]
gi|1787041|gb|AAC73907.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [793, (artP 8.0000e-08)] [+]
gi|1787051|gb|AAC73916.1| fused predicted peptide transport subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [802, (artP 6.0000e-25)] [+]
gi|87081791|gb|AAC73942.2| putrescine transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [828, (artP 5.0000e-29)] [+]
gi|1787085|gb|AAC73947.1| arginine transporter subunit [Escherichia coli K12] [833, (artI 4.0000e-93)] [-]
gi|1787086|gb|AAC73948.1| arginine transporter subunit [Escherichia coli K12] [834, (artM 0.0000e+00) (artQ 5.0000e-20)] [-]
gi|1787087|gb|AAC73949.1| arginine transporter subunit [Escherichia coli K12] [835, (artM 8.0000e-20) (artQ 0.0000e+00)] [-]
gi|1787088|gb|AAC73950.1| arginine transporter subunit [Escherichia coli K12] [836, (artI 0.0000e+00)] [-]
gi|1787089|gb|AAC73951.1| arginine transporter subunit [Escherichia coli K12] [837, (artP 0.0000e+00)] [-]
gi|1787105|gb|AAC73966.1| fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component [Escherichia coli K12] [852, (artP 9.0000e-34)] [+]
gi|1787112|gb|AAC73972.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [858, (artP 3.0000e-15)] [-]
gi|1787113|gb|AAC73973.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [859, (artP 2.0000e-12)] [-]


Expect = 1.5139e-06, size = 17, chromosome:U00096.faa
gi|1786975|gb|AAC73847.1| fused molybdate transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [733, (artP 1.0000e-08)] [-]
gi|1786981|gb|AAC73852.1| molybdate transporter subunit [Escherichia coli K12] [738, (artP 1.0000e-21)] [+]
gi|87081782|gb|AAC73881.2| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [767, (artP 9.0000e-18)] [-]
gi|1787029|gb|AAC73896.1| glutamine transporter subunit [Escherichia coli K12] [782, (artP 9.0000e-49)] [-]
gi|1787030|gb|AAC73897.1| glutamine transporter subunit [Escherichia coli K12] [783, (artM 1.0000e-16) (artQ 3.0000e-19)] [-]
gi|1787031|gb|AAC73898.1| glutamine transporter subunit [Escherichia coli K12] [784, (artI 2.0000e-30)] [-]
gi|1787041|gb|AAC73907.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [793, (artP 8.0000e-08)] [+]
gi|1787051|gb|AAC73916.1| fused predicted peptide transport subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [802, (artP 6.0000e-25)] [+]
gi|87081791|gb|AAC73942.2| putrescine transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [828, (artP 5.0000e-29)] [+]
gi|1787085|gb|AAC73947.1| arginine transporter subunit [Escherichia coli K12] [833, (artI 4.0000e-93)] [-]
gi|1787086|gb|AAC73948.1| arginine transporter subunit [Escherichia coli K12] [834, (artM 0.0000e+00) (artQ 5.0000e-20)] [-]
gi|1787087|gb|AAC73949.1| arginine transporter subunit [Escherichia coli K12] [835, (artM 8.0000e-20) (artQ 0.0000e+00)] [-]
gi|1787088|gb|AAC73950.1| arginine transporter subunit [Escherichia coli K12] [836, (artI 0.0000e+00)] [-]
gi|1787089|gb|AAC73951.1| arginine transporter subunit [Escherichia coli K12] [837, (artP 0.0000e+00)] [-]
gi|1787105|gb|AAC73966.1| fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component [Escherichia coli K12] [852, (artP 9.0000e-34)] [+]
gi|1787112|gb|AAC73972.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [858, (artP 3.0000e-15)] [-]
gi|1787113|gb|AAC73973.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [859, (artP 2.0000e-12)] [-]


Expect = 2.5566e-06, size = 20, chromosome:U00096.faa
gi|1786975|gb|AAC73847.1| fused molybdate transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [733, (artP 1.0000e-08)] [-]
gi|1786981|gb|AAC73852.1| molybdate transporter subunit [Escherichia coli K12] [738, (artP 1.0000e-21)] [+]
gi|87081782|gb|AAC73881.2| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [767, (artP 9.0000e-18)] [-]
gi|1787029|gb|AAC73896.1| glutamine transporter subunit [Escherichia coli K12] [782, (artP 9.0000e-49)] [-]
gi|1787030|gb|AAC73897.1| glutamine transporter subunit [Escherichia coli K12] [783, (artM 1.0000e-16) (artQ 3.0000e-19)] [-]
gi|1787031|gb|AAC73898.1| glutamine transporter subunit [Escherichia coli K12] [784, (artI 2.0000e-30)] [-]
gi|1787041|gb|AAC73907.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [793, (artP 8.0000e-08)] [+]
gi|1787051|gb|AAC73916.1| fused predicted peptide transport subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [802, (artP 6.0000e-25)] [+]
gi|87081791|gb|AAC73942.2| putrescine transporter subunit: ATP-binding component of ABC superfamily [Escherichia coli K12] [828, (artP 5.0000e-29)] [+]
gi|1787085|gb|AAC73947.1| arginine transporter subunit [Escherichia coli K12] [833, (artI 4.0000e-93)] [-]
gi|1787086|gb|AAC73948.1| arginine transporter subunit [Escherichia coli K12] [834, (artM 0.0000e+00) (artQ 5.0000e-20)] [-]
gi|1787087|gb|AAC73949.1| arginine transporter subunit [Escherichia coli K12] [835, (artM 8.0000e-20) (artQ 0.0000e+00)] [-]
gi|1787088|gb|AAC73950.1| arginine transporter subunit [Escherichia coli K12] [836, (artI 0.0000e+00)] [-]
gi|1787089|gb|AAC73951.1| arginine transporter subunit [Escherichia coli K12] [837, (artP 0.0000e+00)] [-]
gi|1787105|gb|AAC73966.1| fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component [Escherichia coli K12] [852, (artP 9.0000e-34)] [+]
gi|1787112|gb|AAC73972.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [858, (artP 3.0000e-15)] [-]
gi|1787113|gb|AAC73973.1| fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [859, (artP 2.0000e-12)] [-]
gi|1787143|gb|AAC74000.1| fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component [Escherichia coli K12] [886, (artP 1.0000e-16)] [+]
gi|1787164|gb|AAC74019.1| alkanesulfonate transporter subunit [Escherichia coli K12] [905, (artP 1.0000e-21)] [-]
gi|1787182|gb|AAC74035.1| fused predicted transporter subunits of ABC superfamily: ATP-binding components [Escherichia coli K12] [921, (artP 2.0000e-10)] [+]



Query: atoDAEB (size: 4)


Expect = 3.8034e-08, size = 4, chromosome:U00096.faa
gi|1788551|gb|AAC75281.1| acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit [Escherichia coli K12] [2192, (atoD 0.0000e+00)] [+]
gi|1788552|gb|AAC75282.1| acetyl-CoA:acetoacetyl-CoA transferase, beta subunit [Escherichia coli K12] [2193, (atoA 0.0000e+00)] [+]
gi|1788553|gb|AAC75283.1| short chain fatty acid transporter [Escherichia coli K12] [2194, (atoE 0.0000e+00)] [+]
gi|1788554|gb|AAC75284.1| acetyl-CoA acetyltransferase [Escherichia coli K12] [2195, (atoB 0.0000e+00)] [+]



Query: bcsABZC (size: 4)


Expect = 1.5093e-09, size = 4, chromosome:U00096.faa
gi|87082283|gb|AAT48188.2| cellulose synthase subunit [Escherichia coli K12] [3456, (bcsC 0.0000e+00)] [-]
gi|1789951|gb|AAC76556.1| endo-1,4-D-glucanase [Escherichia coli K12] [3457, (bcsZ 0.0000e+00)] [-]
gi|1789952|gb|AAC76557.1| regulator of cellulose synthase, cyclic di-GMP binding [Escherichia coli K12] [3458, (bcsB 0.0000e+00)] [-]
gi|87082284|gb|AAC76558.2| cellulose synthase, catalytic subunit [Escherichia coli K12] [3459, (bcsA 0.0000e+00)] [-]



Query: bioBFCD (size: 4)


Expect = 1.0565e-08, size = 4, chromosome:U00096.faa
gi|1786992|gb|AAC73862.1| biotin synthase [Escherichia coli K12] [748, (bioB 0.0000e+00)] [+]
gi|1786993|gb|AAC73863.1| 8-amino-7-oxononanoate synthase [Escherichia coli K12] [749, (bioF 0.0000e+00)] [+]
gi|1786994|gb|AAC73864.1| predicted methltransferase, enzyme of biotin synthesis [Escherichia coli K12] [750, (bioC 0.0000e+00)] [+]
gi|1786995|gb|AAC73865.1| dethiobiotin synthetase [Escherichia coli K12] [751, (bioD 0.0000e+00)] [+]



Query: creABCD (size: 4)


Expect = 2.6316e-07, size = 5, chromosome:U00096.faa
gi|1790859|gb|AAC77350.1| conserved protein [Escherichia coli K12] [4296, (creA 1.0000e-86)] [+]
gi|1790860|gb|AAC77351.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli K12] [4297, (creB 0.0000e+00)] [+]
gi|1790861|gb|AAC77352.1| sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon [Escherichia coli K12] [4298, (creC 0.0000e+00)] [+]
gi|1790862|gb|AAC77353.1| inner membrane protein [Escherichia coli K12] [4299, (creD 0.0000e+00)] [+]
gi|1790863|gb|AAC77354.1| DNA-binding response regulator in two-component regulatory system with ArcB or CpxA [Escherichia coli K12] [4300, (creB 9.0000e-25)] [-]



Query: csgDEFG (size: 4)


Expect = 2.1130e-08, size = 4, chromosome:U00096.faa
gi|1787274|gb|AAC74121.1| outer membrane lipoprotein [Escherichia coli K12] [1007, (csgG 0.0000e+00)] [-]
gi|1787275|gb|AAC74122.1| predicted transport protein [Escherichia coli K12] [1008, (csgF 1.0000e-64)] [-]
gi|1787276|gb|AAC74123.1| predicted  transport protein [Escherichia coli K12] [1009, (csgE 1.0000e-72)] [-]
gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator in two-component regulatory system [Escherichia coli K12] [1010, (csgD 0.0000e+00)] [-]



Query: cusCFBA (size: 4)


Expect = 2.1583e-07, size = 4, chromosome:U00096.faa
gi|1786785|gb|AAC73673.1| copper/silver efflux system, outer membrane component [Escherichia coli K12] [560, (cusC 0.0000e+00)] [+]
gi|1786786|gb|AAC73674.1| periplasmic copper-binding protein [Escherichia coli K12] [561, (cusF 3.0000e-59)] [+]
gi|1786787|gb|AAC73675.1| copper/silver efflux system, membrane fusion protein [Escherichia coli K12] [562, (cusB 0.0000e+00)] [+]
gi|1786788|gb|AAC73676.1| copper/silver efflux system, membrane component [Escherichia coli K12] [563, (cusA 0.0000e+00)] [+]



Query: deoCABD (size: 4)


Expect = 4.5279e-09, size = 4, chromosome:U00096.faa
gi|1790841|gb|AAC77334.1| 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked [Escherichia coli K12] [4280, (deoC 0.0000e+00)] [+]
gi|1790842|gb|AAC77335.1| thymidine phosphorylase [Escherichia coli K12] [4281, (deoA 0.0000e+00)] [+]
gi|1790843|gb|AAC77336.1| phosphopentomutase [Escherichia coli K12] [4282, (deoB 0.0000e+00)] [+]
gi|1790844|gb|AAC77337.1| purine-nucleoside phosphorylase [Escherichia coli K12] [4283, (deoD 0.0000e+00)] [+]



Query: dsbC-recJ-prfB-lysS (size: 4)


Expect = 9.9614e-08, size = 4, chromosome:U00096.faa
gi|1789256|gb|AAC75928.1| lysine tRNA synthetase, constitutive [Escherichia coli K12] [2838, (lysS 0.0000e+00)] [-]
gi|2367172|gb|AAC75929.1| peptide chain release factor RF-2 [Escherichia coli K12] [2839, (prfB 0.0000e+00)] [-]
gi|1789259|gb|AAC75930.1| ssDNA exonuclease, 5' --> 3'-specific [Escherichia coli K12] [2840, (recJ 0.0000e+00)] [-]
gi|1789260|gb|AAC75931.1| protein disulfide isomerase II [Escherichia coli K12] [2841, (dsbC 0.0000e+00)] [-]



Query: fdoGHI-fdhE (size: 4)


Expect = 6.1806e-06, size = 4, chromosome:U00096.faa
gi|1790324|gb|AAD13453.1| formate dehydrogenase formation protein [Escherichia coli K12] [3804, (fdhE 0.0000e+00)] [-]
gi|1790325|gb|AAD13454.1| formate dehydrogenase-O, cytochrome b556 subunit [Escherichia coli K12] [3805, (fdoI 0.0000e+00)] [-]
gi|1790326|gb|AAD13455.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli K12] [3806, (fdoH 0.0000e+00)] [-]
gi|3868720|gb|AAD13456.1| formate dehydrogenase-O, large subunit [Escherichia coli K12] [3807, (fdoG 0.0000e+00)] [-]



Query: fes-ybdZ-entF-fepE (size: 4)


Expect = 3.0216e-07, size = 4, chromosome:U00096.faa
gi|1786799|gb|AAC73686.1| enterobactin/ferric enterobactin esterase [Escherichia coli K12] [574, (fes 0.0000e+00)] [+]
gi|87081760|gb|ABD18641.1| conserved protein [Escherichia coli K12] [575, (ybdZ 1.0000e-41)] [+]
gi|1786801|gb|AAC73687.1| enterobactin synthase multienzyme complex component,  ATP-dependent [Escherichia coli K12] [576, (entF 0.0000e+00)] [+]
gi|1786802|gb|AAC73688.1| regulator of length of O-antigen component of lipopolysaccharide chains [Escherichia coli K12] [577, (fepE 0.0000e+00)] [+]


Expect = 3.2141e-07, size = 5, chromosome:U00096.faa
gi|1786799|gb|AAC73686.1| enterobactin/ferric enterobactin esterase [Escherichia coli K12] [574, (fes 0.0000e+00)] [+]
gi|87081760|gb|ABD18641.1| conserved protein [Escherichia coli K12] [575, (ybdZ 1.0000e-41)] [+]
gi|1786801|gb|AAC73687.1| enterobactin synthase multienzyme complex component,  ATP-dependent [Escherichia coli K12] [576, (entF 0.0000e+00)] [+]
gi|1786802|gb|AAC73688.1| regulator of length of O-antigen component of lipopolysaccharide chains [Escherichia coli K12] [577, (fepE 0.0000e+00)] [+]
gi|1786810|gb|AAC73695.1| 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Escherichia coli K12] [584, (entF 2.0000e-20)] [+]



Query: fixABCX (size: 4)


Expect = 9.9614e-08, size = 4, chromosome:U00096.faa
gi|87081682|gb|AAC73152.2| predicted electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain [Escherichia coli K12] [41, (fixA 0.0000e+00)] [+]
gi|1786226|gb|AAC73153.1| predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like [Escherichia coli K12] [42, (fixB 0.0000e+00)] [+]
gi|1786227|gb|AAC73154.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichia coli K12] [43, (fixC 0.0000e+00)] [+]
gi|1786228|gb|AAC73155.1| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli K12] [44, (fixX 6.0000e-54)] [+]


Expect = 9.9614e-08, size = 4, chromosome:U00096.faa
gi|2367123|gb|AAC74767.1| conserved protein [Escherichia coli K12] [1675, (fixA 7.0000e-64)] [+]
gi|1787990|gb|AAC74768.1| predicted electron transfer flavoprotein, FAD-binding [Escherichia coli K12] [1676, (fixB 5.0000e-73)] [+]
gi|1787991|gb|AAC74769.1| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichia coli K12] [1677, (fixC 0.0000e+00)] [+]
gi|1787992|gb|AAC74770.1| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli K12] [1678, (fixX 1.0000e-33)] [+]



Query: frdABCD (size: 4)


Expect = 1.0565e-08, size = 4, chromosome:U00096.faa
gi|1790594|gb|AAC77111.1| fumarate reductase (anaerobic), membrane anchor subunit [Escherichia coli K12] [4052, (frdD 1.0000e-50)] [-]
gi|1790595|gb|AAC77112.1| fumarate reductase (anaerobic), membrane anchor subunit [Escherichia coli K12] [4053, (frdC 5.0000e-66)] [-]
gi|1790596|gb|AAC77113.1| fumarate reductase (anaerobic), Fe-S subunit [Escherichia coli K12] [4054, (frdB 0.0000e+00)] [-]
gi|1790597|gb|AAC77114.1| fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [Escherichia coli K12] [4055, (frdA 0.0000e+00)] [-]



Query: galETKM (size: 4)


Expect = 2.1130e-08, size = 4, chromosome:U00096.faa
gi|1786971|gb|AAC73843.1| galactose-1-epimerase (mutarotase) [Escherichia coli K12] [729, (galM 0.0000e+00)] [-]
gi|1786972|gb|AAC73844.1| galactokinase [Escherichia coli K12] [730, (galK 0.0000e+00)] [-]
gi|1786973|gb|AAC73845.1| galactose-1-phosphate uridylyltransferase [Escherichia coli K12] [731, (galT 0.0000e+00)] [-]
gi|1786974|gb|AAC73846.1| UDP-galactose-4-epimerase [Escherichia coli K12] [732, (galE 0.0000e+00)] [-]



Query: hemCDXY (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1790234|gb|AAC76805.1| predicted protoheme IX synthesis protein [Escherichia coli K12] [3723, (hemY 0.0000e+00)] [-]
gi|1790235|gb|AAC76806.1| predicted uroporphyrinogen III methylase [Escherichia coli K12] [3724, (hemX 0.0000e+00)] [-]
gi|1790236|gb|AAC76807.1| uroporphyrinogen III synthase [Escherichia coli K12] [3725, (hemD 0.0000e+00)] [-]
gi|48994974|gb|AAT48218.1| hydroxymethylbilane synthase [Escherichia coli K12] [3726, (hemC 0.0000e+00)] [-]



Query: hldD-waaFCL (size: 4)


Expect = 1.5093e-09, size = 4, chromosome:U00096.faa
gi|1790049|gb|AAC76643.1| ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding [Escherichia coli K12] [3548, (rfaD 0.0000e+00)] [+]
gi|1790050|gb|AAC76644.1| ADP-heptose:LPS heptosyltransferase II [Escherichia coli K12] [3549, (rfaC 7.0000e-11) (rfaF 0.0000e+00)] [+]
gi|1790051|gb|AAC76645.1| ADP-heptose:LPS heptosyl transferase I [Escherichia coli K12] [3550, (rfaC 0.0000e+00) (rfaF 1.0000e-08)] [+]
gi|1790052|gb|AAC76646.1| O-antigen ligase [Escherichia coli K12] [3551, (rfaL 0.0000e+00)] [+]



Query: idnDOTR (size: 4)


Expect = 3.9835e-06, size = 5, chromosome:U00096.faa
gi|1790715|gb|AAC77221.1| DNA-binding transcriptional repressor, 5-gluconate-binding [Escherichia coli K12] [4159, (idnR 0.0000e+00)] [-]
gi|1790716|gb|AAC77222.1| L-idonate and D-gluconate transporter [Escherichia coli K12] [4160, (idnT 0.0000e+00)] [-]
gi|1790717|gb|AAC77223.1| 5-keto-D-gluconate-5-reductase [Escherichia coli K12] [4161, (idnO 0.0000e+00)] [-]
gi|1790718|gb|AAC77224.1| L-idonate 5-dehydrogenase, NAD-binding [Escherichia coli K12] [4162, (idnD 0.0000e+00)] [-]
gi|87082401|gb|AAC77226.2| predicted alcohol dehydrogenase, Zn-dependent and NAD(P)-binding [Escherichia coli K12] [4164, (idnD 9.0000e-12)] [-]



Query: iscRSUA (size: 4)


Expect = 3.8034e-08, size = 4, chromosome:U00096.faa
gi|1788877|gb|AAC75581.1| FeS cluster assembly protein [Escherichia coli K12] [2497, (iscA 1.0000e-51)] [-]
gi|1788878|gb|AAC75582.1| scaffold protein [Escherichia coli K12] [2498, (iscU 2.0000e-70)] [-]
gi|48994898|gb|AAT48142.1| cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent [Escherichia coli K12] [2499, (iscS 0.0000e+00)] [-]
gi|1788880|gb|AAC75584.1| DNA-binding transcriptional repressor [Escherichia coli K12] [2500, (iscR 2.0000e-78)] [-]



Query: motAB-cheAW (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1788196|gb|AAC74957.1| purine-binding chemotaxis protein [Escherichia coli K12] [1867, (cheW 5.0000e-79)] [-]
gi|1788197|gb|AAC74958.1| fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein [Escherichia coli K12] [1868, (cheA 0.0000e+00)] [-]
gi|1788198|gb|AAC74959.1| protein that enables flagellar motor rotation [Escherichia coli K12] [1869, (motB 0.0000e+00)] [-]
gi|1788199|gb|AAC74960.1| proton conductor component of flagella motor [Escherichia coli K12] [1870, (motA 0.0000e+00)] [-]



Query: mutY-yggX-mltC-nupG (size: 4)


Expect = 2.1130e-08, size = 4, chromosome:U00096.faa
gi|1789331|gb|AAC75998.1| adenine DNA glycosylase [Escherichia coli K12] [2907, (mutY 0.0000e+00)] [+]
gi|1789332|gb|AAC75999.1| protein that protects iron-sulfur proteins against oxidative damage [Escherichia coli K12] [2908, (yggX 6.0000e-51)] [+]
gi|87082191|gb|AAC76000.2| membrane-bound lytic murein transglycosylase C [Escherichia coli K12] [2909, (mltC 0.0000e+00)] [+]
gi|87082192|gb|AAC76001.2| nucleoside transporter [Escherichia coli K12] [2910, (nupG 0.0000e+00)] [+]



Query: nagBACD (size: 4)


Expect = 1.4942e-07, size = 4, chromosome:U00096.faa
gi|1786890|gb|AAC73769.1| UMP phosphatase [Escherichia coli K12] [654, (nagD 0.0000e+00)] [-]
gi|1786891|gb|AAC73770.1| DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine [Escherichia coli K12] [655, (nagC 0.0000e+00)] [-]
gi|1786892|gb|AAC73771.1| N-acetylglucosamine-6-phosphate deacetylase [Escherichia coli K12] [656, (nagA 0.0000e+00)] [-]
gi|1786893|gb|AAC73772.1| glucosamine-6-phosphate deaminase [Escherichia coli K12] [657, (nagB 0.0000e+00)] [-]



Query: narGHJI (size: 4)


Expect = 7.0099e-07, size = 17, chromosome:U00096.faa
gi|87081797|gb|AAC73980.2| dimethyl sulfoxide reductase, anaerobic, subunit A [Escherichia coli K12] [866, (narG 2.0000e-17)] [+]
gi|1787122|gb|AAC73981.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia coli K12] [867, (narH 4.0000e-20)] [+]
gi|1787231|gb|AAC74082.1| trimethylamine N-oxide (TMAO) reductase I, catalytic subunit [Escherichia coli K12] [970, (narG 8.0000e-08)] [+]
gi|1787477|gb|AAC74308.1| nitrate reductase 1, alpha subunit [Escherichia coli K12] [1199, (narG 0.0000e+00)] [+]
gi|1787478|gb|AAC74309.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli K12] [1200, (narH 0.0000e+00)] [+]
gi|1787479|gb|AAC74310.1| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 [Escherichia coli K12] [1201, (narJ 0.0000e+00)] [+]
gi|1787480|gb|AAC74311.1| nitrate reductase 1, gamma (cytochrome b(NR)) subunit [Escherichia coli K12] [1202, (narI 0.0000e+00)] [+]
gi|1787738|gb|AAC74547.1| nitrate reductase 2 (NRZ), gamma subunit [Escherichia coli K12] [1444, (narI 3.0000e-90)] [-]
gi|1787739|gb|AAC74548.1| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escherichia coli K12] [1445, (narJ 4.0000e-67)] [-]
gi|1787740|gb|AAC74549.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli K12] [1446, (narH 0.0000e+00)] [-]
gi|1787741|gb|AAC74550.1| nitrate reductase 2 (NRZ), alpha subunit [Escherichia coli K12] [1447, (narG 0.0000e+00)] [-]
gi|1787749|gb|AAD13439.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible [Escherichia coli K12] [1454, (narH 3.0000e-12)] [+]
gi|1787870|gb|AAC74659.1| oxidoreductase subunit [Escherichia coli K12] [1566, (narG 7.0000e-18)] [+]
gi|87081941|gb|AAC74660.2| oxidoreductase subunit [Escherichia coli K12] [1567, (narG 2.0000e-13)] [+]
gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli K12] [1568, (narH 3.0000e-20)] [+]
gi|87081954|gb|AAC74741.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1649, (narH 3.0000e-13)] [-]
gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1652, (narH 3.0000e-11)] [-]



Query: narZYWV (size: 4)


Expect = 1.8066e-06, size = 4, chromosome:U00096.faa
gi|1787477|gb|AAC74308.1| nitrate reductase 1, alpha subunit [Escherichia coli K12] [1199, (narZ 0.0000e+00)] [+]
gi|1787478|gb|AAC74309.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli K12] [1200, (narY 0.0000e+00)] [+]
gi|1787479|gb|AAC74310.1| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 [Escherichia coli K12] [1201, (narW 5.0000e-52)] [+]
gi|1787480|gb|AAC74311.1| nitrate reductase 1, gamma (cytochrome b(NR)) subunit [Escherichia coli K12] [1202, (narV 3.0000e-85)] [+]


Expect = 1.8066e-06, size = 4, chromosome:U00096.faa
gi|1787738|gb|AAC74547.1| nitrate reductase 2 (NRZ), gamma subunit [Escherichia coli K12] [1444, (narV 0.0000e+00)] [-]
gi|1787739|gb|AAC74548.1| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escherichia coli K12] [1445, (narW 0.0000e+00)] [-]
gi|1787740|gb|AAC74549.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli K12] [1446, (narY 0.0000e+00)] [-]
gi|1787741|gb|AAC74550.1| nitrate reductase 2 (NRZ), alpha subunit [Escherichia coli K12] [1447, (narZ 0.0000e+00)] [-]


Expect = 3.0564e-06, size = 17, chromosome:U00096.faa
gi|87081797|gb|AAC73980.2| dimethyl sulfoxide reductase, anaerobic, subunit A [Escherichia coli K12] [866, (narZ 6.0000e-16)] [+]
gi|1787122|gb|AAC73981.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia coli K12] [867, (narY 6.0000e-20)] [+]
gi|1787231|gb|AAC74082.1| trimethylamine N-oxide (TMAO) reductase I, catalytic subunit [Escherichia coli K12] [970, (narZ 6.0000e-08)] [+]
gi|1787477|gb|AAC74308.1| nitrate reductase 1, alpha subunit [Escherichia coli K12] [1199, (narZ 0.0000e+00)] [+]
gi|1787478|gb|AAC74309.1| nitrate reductase 1, beta (Fe-S) subunit [Escherichia coli K12] [1200, (narY 0.0000e+00)] [+]
gi|1787479|gb|AAC74310.1| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 [Escherichia coli K12] [1201, (narW 5.0000e-52)] [+]
gi|1787480|gb|AAC74311.1| nitrate reductase 1, gamma (cytochrome b(NR)) subunit [Escherichia coli K12] [1202, (narV 3.0000e-85)] [+]
gi|1787738|gb|AAC74547.1| nitrate reductase 2 (NRZ), gamma subunit [Escherichia coli K12] [1444, (narV 0.0000e+00)] [-]
gi|1787739|gb|AAC74548.1| nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Escherichia coli K12] [1445, (narW 0.0000e+00)] [-]
gi|1787740|gb|AAC74549.1| nitrate reductase 2 (NRZ), beta subunit [Escherichia coli K12] [1446, (narY 0.0000e+00)] [-]
gi|1787741|gb|AAC74550.1| nitrate reductase 2 (NRZ), alpha subunit [Escherichia coli K12] [1447, (narZ 0.0000e+00)] [-]
gi|1787749|gb|AAD13439.1| formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible [Escherichia coli K12] [1454, (narY 4.0000e-12)] [+]
gi|1787870|gb|AAC74659.1| oxidoreductase subunit [Escherichia coli K12] [1566, (narZ 8.0000e-17)] [+]
gi|87081941|gb|AAC74660.2| oxidoreductase subunit [Escherichia coli K12] [1567, (narZ 5.0000e-13)] [+]
gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli K12] [1568, (narY 5.0000e-20)] [+]
gi|87081954|gb|AAC74741.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1649, (narY 2.0000e-13)] [-]
gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli K12] [1652, (narY 7.0000e-11)] [-]



Query: nirBDC-cysG (size: 4)


Expect = 6.3391e-08, size = 4, chromosome:U00096.faa
gi|1789765|gb|AAC76390.1| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli K12] [3293, (nirB 0.0000e+00)] [+]
gi|1789766|gb|AAC76391.1| nitrite reductase, NAD(P)H-binding, small subunit [Escherichia coli K12] [3294, (nirD 3.0000e-60)] [+]
gi|87082249|gb|AAC76392.2| nitrite transporter [Escherichia coli K12] [3295, (nirC 0.0000e+00)] [+]
gi|1789768|gb|AAC76393.1| fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase [Escherichia coli K12] [3296, (cysG 0.0000e+00)] [+]



Query: nrdHIEF (size: 4)


Expect = 4.5279e-09, size = 4, chromosome:U00096.faa
gi|1789028|gb|AAC75720.1| glutaredoxin-like protein [Escherichia coli K12] [2632, (nrdH 3.0000e-44)] [+]
gi|1789029|gb|AAC75721.1| protein that stimulates ribonucleotide reduction [Escherichia coli K12] [2633, (nrdI 2.0000e-76)] [+]
gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli K12] [2634, (nrdE 0.0000e+00)] [+]
gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli K12] [2635, (nrdF 0.0000e+00)] [+]



Query: pdhR-aceEF-lpdA (size: 4)


Expect = 7.1843e-07, size = 4, chromosome:U00096.faa
gi|1786303|gb|AAC73224.1| DNA-binding transcriptional dual regulator [Escherichia coli K12] [110, (pdhR 0.0000e+00)] [+]
gi|1786304|gb|AAC73225.1| pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [Escherichia coli K12] [111, (aceE 0.0000e+00)] [+]
gi|1786305|gb|AAC73226.1| pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [Escherichia coli K12] [112, (aceF 0.0000e+00)] [+]
gi|1786307|gb|AAC73227.1| lipoamide dehydrogenase, E3 component is part of three enzyme complexes [Escherichia coli K12] [113, (lpd 0.0000e+00)] [+]



Query: pdxB-usg-truA-dedA (size: 4)


Expect = 9.9614e-08, size = 4, chromosome:U00096.faa
gi|1788656|gb|AAC75377.1| conserved inner membrane protein [Escherichia coli K12] [2290, (dedA 0.0000e+00)] [-]
gi|1788657|gb|AAC75378.1| pseudouridylate synthase I [Escherichia coli K12] [2291, (truA 0.0000e+00)] [-]
gi|1788658|gb|AAC75379.1| predicted semialdehyde dehydrogenase [Escherichia coli K12] [2292, (usg 0.0000e+00)] [-]
gi|1788660|gb|AAC75380.1| erythronate-4-phosphate dehydrogenase [Escherichia coli K12] [2293, (pdxB 0.0000e+00)] [-]



Query: pgaABCD (size: 4)


Expect = 1.5093e-09, size = 4, chromosome:U00096.faa
gi|1787258|gb|AAC74106.1| predicted inner membrane protein [Escherichia coli K12] [994, (pgaD 2.0000e-65)] [-]
gi|1787259|gb|AAC74107.1| predicted glycosyl transferase [Escherichia coli K12] [995, (pgaC 0.0000e+00)] [-]
gi|1787260|gb|AAC74108.1| predicted enzyme associated with biofilm formation [Escherichia coli K12] [996, (pgaB 0.0000e+00)] [-]
gi|1787261|gb|AAC74109.1| predicted outer membrane protein [Escherichia coli K12] [997, (pgaA 0.0000e+00)] [-]



Query: prpBCDE (size: 4)


Expect = 2.1583e-07, size = 4, chromosome:U00096.faa
gi|1786525|gb|AAC73434.1| 2-methylisocitrate lyase [Escherichia coli K12] [321, (prpB 0.0000e+00)] [+]
gi|1786527|gb|AAC73436.1| 2-methylcitrate synthase [Escherichia coli K12] [322, (prpC 0.0000e+00)] [+]
gi|1786528|gb|AAC73437.1| 2-methylcitrate dehydratase [Escherichia coli K12] [323, (prpD 0.0000e+00)] [+]
gi|1786529|gb|AAC73438.1| predicted propionyl-CoA synthetase with ATPase domain [Escherichia coli K12] [324, (prpE 0.0000e+00)] [+]



Query: radC-rpmBG-mutM (size: 4)


Expect = 1.0565e-08, size = 4, chromosome:U00096.faa
gi|1790066|gb|AAC76659.1| formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase [Escherichia coli K12] [3564, (mutM 0.0000e+00)] [-]
gi|1790067|gb|AAC76660.1| 50S ribosomal subunit protein L33 [Escherichia coli K12] [3565, (rpmG 5.0000e-27)] [-]
gi|1790068|gb|AAC76661.1| 50S ribosomal subunit protein L28 [Escherichia coli K12] [3566, (rpmB 3.0000e-41)] [-]
gi|87082300|gb|AAC76662.2| protein associated with replication fork, possible DNA repair protein [Escherichia coli K12] [3567, (yicR 0.0000e+00)] [-]



Query: rpoE-rseABC (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1788923|gb|AAC75623.1| RseC protein involved in reduction of the SoxR iron-sulfur cluster [Escherichia coli K12] [2539, (rseC 3.0000e-63)] [-]
gi|1788924|gb|AAC75624.1| anti-sigma factor [Escherichia coli K12] [2540, (rseB 0.0000e+00)] [-]
gi|1788925|gb|AAC75625.1| anti-sigma factor [Escherichia coli K12] [2541, (rseA 0.0000e+00)] [-]
gi|1788926|gb|AAC75626.1| RNA polymerase, sigma 24 (sigma E) factor [Escherichia coli K12] [2542, (rpoE 0.0000e+00)] [-]



Query: rpoZ-spoT-trmH-recG (size: 4)


Expect = 1.0565e-08, size = 4, chromosome:U00096.faa
gi|1790081|gb|AAC76673.1| RNA polymerase, omega subunit [Escherichia coli K12] [3578, (rpoZ 6.0000e-35)] [+]
gi|1790082|gb|AAC76674.1| bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [Escherichia coli K12] [3579, (spoT 0.0000e+00)] [+]
gi|1790083|gb|AAC76675.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli K12] [3580, (trmH 0.0000e+00)] [+]
gi|2367254|gb|AAC76676.1| ATP-dependent DNA helicase [Escherichia coli K12] [3581, (recG 0.0000e+00)] [+]



Query: rpsF-priB-rpsR-rplI (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1790644|gb|AAC77157.1| 30S ribosomal subunit protein S6 [Escherichia coli K12] [4098, (rpsF 1.0000e-66)] [+]
gi|1790645|gb|AAC77158.1| primosomal protein N [Escherichia coli K12] [4099, (priB 7.0000e-58)] [+]
gi|1790646|gb|AAC77159.1| 30S ribosomal subunit protein S18 [Escherichia coli K12] [4100, (rpsR 3.0000e-39)] [+]
gi|1790647|gb|AAC77160.1| 50S ribosomal subunit protein L9 [Escherichia coli K12] [4101, (rplI 2.0000e-60)] [+]



Query: rpsLG-fusA-tufA (size: 4)


Expect = 9.9614e-08, size = 4, chromosome:U00096.faa
gi|1789737|gb|AAC76364.1| protein chain elongation factor EF-Tu (duplicate of tufB) [Escherichia coli K12] [3266, (fusA 3.0000e-08) (tufA 0.0000e+00)] [-]
gi|1789738|gb|AAC76365.1| protein chain elongation factor EF-G, GTP-binding [Escherichia coli K12] [3267, (fusA 0.0000e+00)] [-]
gi|1789739|gb|AAC76366.1| 30S ribosomal subunit protein S7 [Escherichia coli K12] [3268, (rpsG 2.0000e-97)] [-]
gi|1789740|gb|AAC76367.1| 30S ribosomal subunit protein S12 [Escherichia coli K12] [3269, (rpsL 3.0000e-69)] [-]



Query: rpsP-rimM-trmD-rplS (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1788958|gb|AAC75655.1| 50S ribosomal subunit protein L19 [Escherichia coli K12] [2570, (rplS 7.0000e-61)] [-]
gi|1788959|gb|AAC75656.1| tRNA (guanine-1-)-methyltransferase [Escherichia coli K12] [2571, (trmD 0.0000e+00)] [-]
gi|87082136|gb|AAC75657.2| 16S rRNA processing protein [Escherichia coli K12] [2572, (rimM 0.0000e+00)] [-]
gi|1788961|gb|AAC75658.1| 30S ribosomal subunit protein S16 [Escherichia coli K12] [2573, (rpsP 1.0000e-42)] [-]



Query: sbm-argK-ygfGH (size: 4)


Expect = 3.8034e-08, size = 4, chromosome:U00096.faa
gi|1789284|gb|AAC75954.1| methylmalonyl-CoA mutase [Escherichia coli K12] [2864, (scpA 0.0000e+00)] [+]
gi|1789285|gb|AAC75955.1| membrane ATPase/protein kinase [Escherichia coli K12] [2865, (argK 0.0000e+00)] [+]
gi|87082183|gb|AAC75956.2| methylmalonyl-CoA decarboxylase, biotin-independent [Escherichia coli K12] [2866, (scpB 0.0000e+00)] [+]
gi|1789287|gb|AAC75957.1| propionyl-CoA:succinate-CoA transferase [Escherichia coli K12] [2867, (scpC 0.0000e+00)] [+]



Query: smtA-mukFEB (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1787151|gb|AAC74007.1| predicted S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli K12] [893, (smtA 0.0000e+00)] [+]
gi|1787152|gb|AAC74008.1| Involved in chromosome partioning, Ca2+ binding protein [Escherichia coli K12] [894, (mukF 0.0000e+00)] [+]
gi|1787153|gb|AAC74009.1| protein involved in chromosome partitioning [Escherichia coli K12] [895, (mukE 0.0000e+00)] [+]
gi|1787154|gb|AAC74010.1| fused chromosome partitioning protein: predicted nucleotide hydrolase/conserved protein/conserved protein [Escherichia coli K12] [896, (mukB 0.0000e+00)] [+]



Query: tgt-yajC-secDF (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1786607|gb|AAC73509.1| tRNA-guanine transglycosylase [Escherichia coli K12] [394, (tgt 0.0000e+00)] [+]
gi|1786608|gb|AAC73510.1| SecYEG protein translocase auxillary subunit [Escherichia coli K12] [395, (yajC 3.0000e-57)] [+]
gi|1786609|gb|AAC73511.1| SecYEG protein translocase auxillary subunit [Escherichia coli K12] [396, (secD 0.0000e+00)] [+]
gi|1786610|gb|AAC73512.1| SecYEG protein translocase auxillary subunit [Escherichia coli K12] [397, (secD 4.0000e-08) (secF 0.0000e+00)] [+]



Query: thrLABC (size: 4)


Expect = 3.2442e-06, size = 3, chromosome:U00096.faa
gi|1786183|gb|AAC73113.1| fused aspartokinase I and homoserine dehydrogenase I [Escherichia coli K12] [2, (thrA 0.0000e+00)] [+]
gi|1786184|gb|AAC73114.1| homoserine kinase [Escherichia coli K12] [3, (thrB 0.0000e+00)] [+]
gi|1786185|gb|AAC73115.1| threonine synthase [Escherichia coli K12] [4, (thrC 0.0000e+00)] [+]



Query: xseB-ispA-dxs-yajO (size: 4)


Expect = 2.1583e-07, size = 4, chromosome:U00096.faa
gi|87081735|gb|AAC73522.2| predicted oxidoreductase, NAD(P)-binding [Escherichia coli K12] [407, (yajO 0.0000e+00)] [-]
gi|1786622|gb|AAC73523.1| 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring [Escherichia coli K12] [408, (dxs 0.0000e+00)] [-]
gi|1786623|gb|AAC73524.1| geranyltranstransferase [Escherichia coli K12] [409, (ispA 0.0000e+00)] [-]
gi|1786624|gb|AAC73525.1| exonuclease VII small subunit [Escherichia coli K12] [410, (xseB 2.0000e-40)] [-]



Query: ybgC-tolQRA (size: 4)


Expect = 4.5279e-09, size = 4, chromosome:U00096.faa
gi|1786957|gb|AAC73830.1| predicted acyl-CoA thioesterase [Escherichia coli K12] [716, (ybgC 9.0000e-74)] [+]
gi|1786958|gb|AAC73831.1| membrane spanning protein in TolA-TolQ-TolR complex [Escherichia coli K12] [717, (tolQ 0.0000e+00)] [+]
gi|1786959|gb|AAC73832.1| membrane spanning protein in TolA-TolQ-TolR complex [Escherichia coli K12] [718, (tolR 3.0000e-67)] [+]
gi|1786960|gb|AAC73833.1| membrane anchored protein in TolA-TolQ-TolR complex [Escherichia coli K12] [719, (tolA 6.0000e-56)] [+]



Query: ybjC-nfsA-rimK-ybjN (size: 4)


Expect = 3.0186e-10, size = 4, chromosome:U00096.faa
gi|1787074|gb|AAC73937.1| predicted inner membrane protein [Escherichia coli K12] [823, (ybjC 3.0000e-39)] [+]
gi|1787075|gb|AAC73938.1| nitroreductase A, NADPH-dependent, FMN-dependent [Escherichia coli K12] [824, (nfsA 0.0000e+00)] [+]
gi|1787076|gb|AAC73939.1| ribosomal protein S6 modification protein [Escherichia coli K12] [825, (rimK 0.0000e+00)] [+]
gi|1787077|gb|AAC73940.1| predicted oxidoreductase [Escherichia coli K12] [826, (ybjN 1.0000e-88)] [+]



Query: yrdD-rimN-aroE-yrdB (size: 4)


Expect = 4.5279e-09, size = 4, chromosome:U00096.faa
gi|1789674|gb|AAC76305.1| conserved protein [Escherichia coli K12] [3207, (yrdB 1.0000e-49)] [-]
gi|1789675|gb|AAC76306.1| dehydroshikimate reductase, NAD(P)-binding [Escherichia coli K12] [3208, (aroE 0.0000e+00)] [-]
gi|2367210|gb|AAC76307.1| predicted ribosome maturation factor [Escherichia coli K12] [3209, (rimN 0.0000e+00)] [-]
gi|48994931|gb|AAT48175.1| predicted DNA topoisomerase [Escherichia coli K12] [3210, (yrdD 0.0000e+00)] [-]