Figure S1: Top motif from PosMotif1 on samples of type real from the Tompa data set in Tompa's format

>data set
dm01r
>instances
seq_0,-197,CGCCGGCTGAGCAGCCT
seq_1,-986,CGCCGCATGTGAGGGGT
seq_2,-1104,CGCCGACTGCGCTGGAT
seq_3,-112,CGCCGGATAAGCTGGAT
>data set
dm02r
>instances
seq_0,-1272,CAATCCCGATCC
seq_0,-1254,CGATCCCAATCC
seq_0,-1248,CAATCCCAATCC
seq_0,-1242,CAATCCCAATCC
seq_0,-966,CTATCCCGGTCC
>data set
dm03r
>instances
seq_0,-599,GAATTCCCGTCGATC
seq_0,-218,GAATGGCCGTCGAGC
seq_2,-1540,GAACACCCGCGGATC
seq_2,-533,GAAACCCCGAGGAGC
>data set
dm04r
>instances
seq_0,-91,GAACTCTCTCTC
seq_1,-314,GCCCTCTCGCTC
seq_2,-414,GAACTCTCTCTC
seq_3,-479,GCTCTCTCACTC
>data set
dm05r
>instances
seq_2,-2383,CCCCACCCCCCCACCA
seq_2,-2011,CCCCAACCCCCCACCA
>data set
dm06r
>instances
seq_0,-2828,TATTTTCAGATAT
seq_0,-1954,TATTTCCAAATAT
seq_0,-961,TATCTCCATATAT
seq_0,-257,TATATACATATAT
>data set
hm01r
>instances
seq_5,-1870,CTGTAATCCCAGCTACTCGGGA
seq_8,-1993,CTGTAATCCCAGCACTTTGGGA
seq_10,-1371,CTGTAATCCCAGCACTTTGGGA
seq_10,-1235,CTGTAATCCCAGCTATTCAGGA
seq_13,-1464,CTGTAATCCCAGCACTTTGGGA
seq_15,-1532,CTGTAATCCTAGCACTTTGAGA
seq_16,-1623,CTGTAATCCCAGCTACTCAGGA
>data set
hm02r
>instances
seq_4,-896,CCTCCCAAAGTGCTGGGATTACAGG
seq_5,-850,CCTCCCAAAGTGCTGGGATTACAGG
>data set
hm03r
>instances
seq_0,-575,CCCAGCTTAGTGCCTGACACACAGAGGGG
seq_1,-556,CCCAGCTTAGTGCCTGACACAGGGAGGTG
seq_2,-595,CCCAGCTTAGTGCCTGACACAGGGAGATG
>data set
hm04r
>instances
seq_0,-1499,CCAGGCTAGAGTGCAGTG
seq_2,-838,CTAGGCTGGAGTGCAGCG
seq_9,-1186,CCAGGCTGGAGTGCAGTG
seq_10,-1122,CCAGGCTGGAGTGCAGTG
>data set
hm05r
>instances
seq_1,-461,GGGCGACCGCGGTG
seq_1,-208,GGGCGACCGCGGAG
>data set
hm06r
>instances
seq_0,-269,CCGCCTCGGGCTCCACCC
seq_0,-191,CCGCCGCGTAGCCACACC
seq_1,-136,CCGCCCCGCCCCTGCGCC
seq_2,-232,CGGCCACGTGACCAGTCC
seq_3,-38,CAGCCGCGCGCCCCTTCC
seq_4,-379,CTGCCGCGGGCCGGGGCC
seq_5,-444,CGGCCTCGCCTGTGACCC
seq_5,-148,CCGCCCCGTCCGCGCACC
seq_7,-206,CAGCCTCGAGTGTACACC
seq_8,-110,CCGCCCCGTCCCGACCCC
>data set
hm07r
>instances
seq_1,-465,CTGAGAAGCAAA
seq_2,-610,CTGAGAAGACAA
seq_3,-923,CTGAGAAGTGAA
seq_4,-81,CTCAGAAGGGAA
>data set
hm08r
>instances
seq_1,-28,TGACGT
seq_2,-64,TGACGT
seq_3,-239,TGACGT
seq_4,-181,TGACGT
seq_5,-181,TGACGT
seq_6,-142,TGACGT
seq_6,-124,TGACGT
seq_9,-100,TGACGT
seq_11,-80,TGACGT
seq_12,-232,TGACGT
seq_12,-30,TGACGT
>data set
hm09r
>instances
seq_0,-1120,GGGCTCCCGTAAGCAC
seq_1,-232,GAGCGCCCGAGTGCTC
seq_2,-303,GCACTCCCGTTTCCCC
seq_3,-701,GTTCGCCCGCTGGCCC
seq_5,-595,GCACACCCGGGCCCGC
seq_6,-195,GCCCGCCCGCCCGCCC
seq_7,-302,GCGCTCCCGGCGCCCC
seq_8,-373,GAGCTCCCGCCACCAC
>data set
hm10r
>instances
seq_0,-357,CAGGCTGGGCC
seq_1,-48,CGGGCTTTGGC
seq_2,-350,CCGGCTGAGTC
seq_3,-389,CAGGCTGGGAC
seq_4,-195,CCGGCTGGGCC
seq_5,-123,CGGGCTGCGGC
>data set
hm11r
>instances
seq_0,-510,CAAAGTAGCCAAT
seq_3,-741,CTGAACAGCTAAT
seq_4,-80,CCTATCAGCTGAT
seq_5,-481,CACACCAGCTAAT
seq_6,-426,CTCAACAGCCCAT
seq_7,-583,CCTATTAGCACAT
>data set
hm12r
>instances
seq_0,-146,AAATTGACGTCATGGTAA
seq_0,-128,AAATTGACGTCATGGTAA
>data set
hm13r
>instances
seq_0,-733,TAACTGAAGATCCCA
seq_1,-559,TAACTCAAAAACGGA
seq_2,-549,TAACTAACCTGCACA
seq_4,-221,TAACTGAGGGCCTGA
seq_5,-166,TAACTTAGATTCCCA
>data set
hm14r
>instances
seq_1,-365,CACCATGAGCTTTCCATG
seq_1,-160,CACCATGAGTCTTCCATG
>data set
hm15r
>instances
seq_1,-1915,CACACCTGTAGTCCCAGCTATTCAG
seq_2,-1168,CACACCTGTAGTCCCAGCTACTCGG
>data set
hm16r
>instances
seq_0,-2252,CCAGGCTGCAGTGCAGTGGTGCGAT
seq_1,-1886,CCAGGCTGGAGTGCAGTGCCTCTAT
seq_4,-2547,CCAGGCTGGAGTGCAGTGGCGCGAT
seq_4,-1910,CCAGGCTGGAGTGCAGTGGCGCGAT
seq_5,-2732,CCAGGCTGGAGTGCAGTGGCACGAT
seq_6,-2451,CCAGGCTGGAGTGCCGTGGCGCGAT
>data set
hm17r
>instances
seq_0,-101,ACTCGGGATCGATCTGGAACT
seq_1,-101,ACTCGGGATCGATCTGGAGCT
seq_2,-103,ACTCCGGATCGATCTGGAGCT
>data set
hm18r
>instances
seq_0,-330,GCCACCGCACTCCAGCCTGGG
seq_1,-2707,GCCACTGCACTCCAGCCTGGG
seq_3,-1878,GCCACTGCACTCCAGCCTGGG
>data set
hm19r
>instances
seq_0,-406,CTACCACCACCCCCAA
seq_2,-365,CTACCACCACCCACAA
>data set
hm20r
>instances
seq_3,-1497,CTGGGATTACA
seq_4,-456,CTGGGATTACA
seq_6,-1685,CTGGGATTACA
seq_15,-383,CTGGGATTACA
seq_19,-884,CTGGGATTACA
seq_22,-838,CTGGGATTACA
seq_24,-1515,CTGGGATTACA
seq_25,-1866,CTGGGATTACA
seq_29,-622,CTGGGATTACA
seq_31,-1988,CTGGGATTACA
seq_31,-1841,CTGGGATTACA
seq_32,-788,CTGGGATTACA
>data set
hm21r
>instances
seq_0,-527,TCCCTTTTTGGCC
seq_1,-979,TCCCTATTTGGCC
seq_2,-225,TCCATATACGGCC
seq_2,-179,TCCTTCTTTGGTC
seq_3,-315,TCCATATTAGGAC
seq_4,-100,TCCTTTTATGGCC
>data set
hm22r
>instances
seq_0,-421,CACCTCTGTCACCTTCC
seq_1,-358,CACCTCTGTCACCTTCC
seq_3,-291,CGCCTCTGTCACCTTCC
>data set
hm23r
>instances
seq_0,-414,TGGTCA
seq_1,-489,TGGTCA
seq_2,-59,TGGTCA
seq_3,-458,TGGTCA
>data set
hm24r
>instances
seq_0,-13,GCCGCTATT
seq_1,-385,GCCGCCCTT
seq_2,-10,GCCGCCATT
seq_3,-333,GCCGGCCTT
seq_3,-35,GCCGGGCTT
seq_4,-16,GCCGCAGTT
seq_5,-99,GCCGCCGTT
seq_5,-96,GCCGTTGTT
seq_6,-358,GCCGTCCTT
seq_7,-453,GCCGACTTT
>data set
hm25r
>instances
seq_0,-146,AAATTGACGTCATGGTAA
seq_0,-128,AAATTGACGTCATGGTAA
>data set
hm26r
>instances
seq_1,-72,CCCGCCTCCCGCTCCC
seq_2,-593,CCCGCCTCAGGCTCCC
seq_4,-906,CCCGCCTCGGCCTCCC
seq_5,-860,CCCGCCTCAACCTCCC
>data set
mus01r
>instances
seq_0,-402,ACAGCTATTCTTCCAT
seq_0,-360,AGAGTTTCCGTTCCAT
seq_2,-474,ACAGCTTGCCTTCCAT
seq_2,-216,AGAGATGGCCTTGCAT
>data set
mus02r
>instances
seq_2,-895,ACATACATACACACATGC
seq_3,-722,ACATAGATACACACATGC
seq_7,-736,AAATAAATACATACATAC
>data set
mus03r
>instances
seq_1,-14,TGGCTTCAG
seq_2,-480,TGCCTTCAG
seq_2,-72,TGGCTTCAG
seq_3,-71,TGGCTTCAG
seq_4,-293,TGCCTTCAG
>data set
mus04r
>instances
seq_0,-622,AACCAGATAT
seq_1,-37,AACAGGATAT
seq_2,-916,AACCAGATAT
seq_4,-778,AACAAGATAT
seq_5,-844,AACTGGATAT
>data set
mus05r
>instances
seq_0,-251,ATGAATTAAAAC
seq_1,-479,ATGAGGTAAGAC
seq_2,-232,ATGACGTCAACC
seq_3,-278,ATGAGATGAATC
>data set
mus06r
>instances
seq_2,-230,ATAAGAAAGTAGAG
seq_2,-167,ATAAGAAAGTAGAG
>data set
mus07r
>instances
seq_0,-985,CACGGTGCCCAGGCACC
seq_3,-127,CACGGTGCCCGGGCAAC
>data set
mus08r
>instances
seq_1,-677,CACACACACAC
seq_1,-666,CACACACACAC
seq_1,-664,CACACACACAC
seq_1,-662,CACACACACAC
seq_1,-660,CACACACACAC
seq_1,-658,CACACACACAC
seq_1,-656,CACACACACAC
seq_1,-654,CACACACACAC
seq_1,-652,CACACACACAC
seq_1,-650,CACACACACAC
seq_1,-648,CACACACACAC
seq_1,-646,CACACACACAC
seq_1,-644,CACACACACAC
seq_2,-315,CACACACACAC
seq_2,-313,CACACACACAC
seq_2,-311,CACACACACAC
seq_2,-309,CACACACACAC
seq_2,-307,CACACACACAC
seq_2,-305,CACACACACAC
seq_2,-303,CACACACACAC
seq_2,-301,CACACACACAC
seq_2,-299,CACACACACAC
seq_2,-297,CACACACACAC
seq_2,-295,CACACACACAC
seq_2,-293,CACACACACAC
seq_2,-291,CACACACACAC
seq_2,-289,CACACACACAC
seq_2,-287,CACACACACAC
seq_2,-285,CACACACACAC
>data set
mus09r
>instances
seq_1,-374,GAGAGGCAAGA
seq_1,-325,GAGAGGCAAGA
>data set
mus10r
>instances
seq_0,-73,CCCCGCCC
seq_0,-55,CTCCGCCC
seq_2,-71,CTCCGCCC
seq_2,-51,CTCCGCCC
seq_3,-595,CCCCGCCC
seq_3,-506,CCCCGCCC
seq_3,-481,CCCCGCCC
seq_3,-468,CTCCGCCC
seq_4,-128,CCCCGCCC
seq_5,-665,CGCCGCCC
seq_6,-132,CTCCGCCC
seq_7,-124,CTCCGCCC
seq_7,-89,CCCCGCCC
seq_8,-133,CTCCGCCC
seq_8,-126,CCCCGCCC
seq_9,-174,CTCCGCCC
seq_9,-154,CACCGCCC
seq_11,-829,CCCCGCCC
seq_11,-823,CCCCGCCC
>data set
mus11r
>instances
seq_0,-229,GGCAAGGGCGGC
seq_1,-129,GCCATTCGCGAC
seq_1,-97,GCCAGTTGGGGC
seq_1,-68,GACAGCGGCGCC
seq_2,-232,GACATTGGAGTC
seq_3,-287,GGCAGTAGAGCC
seq_5,-495,GCCAATGGCGGC
seq_6,-89,GTCAGCTGTGTC
seq_7,-176,GGCAACAGCGGC
seq_7,-20,GGCATCGGAGCC
seq_8,-103,GCCACTGGAGCC
seq_9,-214,GTCACATGGGTC
seq_9,-191,GCCAGTCGTGCC
seq_10,-481,GACACAGGAGAC
seq_10,-273,GACAAAGGAGAC
seq_11,-155,GGCATTTGTGCC
seq_11,-48,GACAGCTGTGTC
>data set
mus12r
>instances
seq_0,-176,ATGGGGGTTTAA
seq_0,-92,AAATATGTGTAA
seq_1,-253,ATTATGGTGTAA
seq_1,-95,AATCTGGTGTAA
seq_2,-423,AATTGAGTTTAA
seq_2,-260,AATGGAGTGTAA
>data set
yst01r
>instances
seq_0,-282,TTTTTTTTCGC
seq_1,-293,TTCTTTTTCTC
seq_2,-651,TTGTTTTTCAC
seq_3,-287,TTTTTTTTCTC
seq_5,-826,TTCTTTTTCCC
seq_6,-944,TTATTTTTCCC
seq_7,-521,TTTTTTTTCTC
>data set
yst02r
>instances
seq_1,-416,CGGCGGTCTTTCGTCCG
seq_2,-279,CGGAGCACTGTTGAGCG
seq_3,-172,CGGCGCACTCTCGCCCG
>data set
yst03r
>instances
seq_0,-192,CAGATTCTTATTATTAAG
seq_4,-427,CAGCTCCTCTATAATAAG
seq_5,-110,CAGATACTTCATTATCAG
seq_6,-120,CAGTTACTAGTTCATTTG
seq_7,-65,CAGCTACTGACAACTAAG
>data set
yst04r
>instances
seq_1,-343,TTTTCTGGCATCC
seq_3,-677,TTTTCTGGCAACC
seq_4,-180,TTTTCTGGCACAC
seq_6,-721,TTTTCCGGCAAGC
>data set
yst05r
>instances
seq_0,-217,CTAATTGGGTAAGT
seq_1,-327,CTAATTAGGAAACT
seq_2,-201,CTAATAGGGAAATT
>data set
yst06r
>instances
seq_5,-493,TAAGGCATCGCAC
seq_6,-154,TAAGGCATCGCAC
>data set
yst08r
>instances
seq_0,-468,CACCCAAAC
seq_2,-633,CACCCATAC
seq_3,-653,CACCCAGAC
seq_4,-453,CACCCACGC
seq_4,-409,CACCCAGAC
seq_6,-446,CACCCAATC
seq_6,-333,CACCCAAGC
seq_7,-900,CACCCAAAC
seq_7,-436,CACCCACAC
seq_7,-420,CACCCAGAC
seq_8,-416,CACCCAATC
>data set
yst09r
>instances
seq_2,-157,TAGCCGCC
seq_11,-484,TAGCCGCC
seq_12,-245,TAGCCGCC
seq_13,-857,TAGCCGCC
seq_15,-448,TAGCCGCC