Figure S2: Top motif from PosMotif2 on samples of type real from the Tompa data set in Tompa's format

>data set
dm01r
>instances
seq_0,-197,CGCCGGCTGAGCAGCCT
seq_1,-986,CGCCGCATGTGAGGGGT
seq_2,-1104,CGCCGACTGCGCTGGAT
seq_3,-112,CGCCGGATAAGCTGGAT
>data set
dm02r
>instances
seq_0,-1341,CCATCGCCATC
seq_0,-1273,CCAATCCCGATCCCTAGCCCGATCCCAATCCCAATCCCAATCCC
seq_0,-968,CACTATCCCGGTCC
seq_0,-496,CCGTCCCGCTC
seq_0,-329,CCATCCCGCTGC
seq_0,-207,CTGTCCCGCTC
>data set
dm03r
>instances
seq_0,-599,GAATTCCCGTCGATC
seq_0,-218,GAATGGCCGTCGAGC
seq_2,-1540,GAACACCCGCGGATC
seq_2,-533,GAAACCCCGAGGAGC
>data set
dm04r
>instances
seq_0,-91,GAACTCTCTCTCTTGCTC
seq_1,-776,GCTCTCCCCCTC
seq_1,-320,GATCTCGCCCTCTCGCTC
seq_1,-293,GACCTCTCTTTC
seq_2,-414,GAACTCTCTCTCTCTC
seq_3,-483,GATCGCTCTCTCACTC
>data set
dm05r
>instances
seq_2,-2383,CCCCACCCCCCCACCA
seq_2,-2011,CCCCAACCCCCCACCA
>data set
dm06r
>instances
seq_0,-2829,ATATTTTCAGATAT
seq_0,-1955,ATATTTCCAAATAT
seq_0,-961,TATCTCCATATAT
seq_0,-838,ATATCTCCTAATAT
seq_0,-258,ATATATACATATAT
>data set
hm01r
>instances
seq_5,-1870,CTGTAATCCCAGCTACTCGGGA
seq_7,-1910,CTGTAGTCCCAGCTATTCAGGA
seq_8,-1993,CTGTAATCCCAGCACTTTGGGA
seq_8,-1842,CTGTAGTCCCAGCTACTCGGGA
seq_10,-1371,CTGTAATCCCAGCACTTTGGGA
seq_10,-1235,CTGTAATCCCAGCTATTCAGGA
seq_13,-1464,CTGTAATCCCAGCACTTTGGGA
seq_15,-1532,CTGTAATCCTAGCACTTTGAGA
seq_16,-1926,CTGTAACCCCAGCTACTGAGGA
seq_16,-1756,CTGTAATCCCAACACTTTGGG
seq_16,-1623,CTGTAATCCCAGCTACTCAGGA
>data set
hm02r
>instances
seq_4,-896,CCTCCCAAAGTGCTGGGATTACAGG
seq_5,-850,CCTCCCAAAGTGCTGGGATTACAGG
>data set
hm03r
>instances
seq_0,-575,CCCAGCTTAGTGCCTGACACACAGAGGGG
seq_1,-556,CCCAGCTTAGTGCCTGACACAGGGAGGTG
seq_2,-595,CCCAGCTTAGTGCCTGACACAGGGAGATG
>data set
hm04r
>instances
seq_0,-1502,TGCCCAGGCTAGAGTGCAGTGG
seq_1,-1215,CCGGCCGGGAGTGCAGAG
seq_2,-841,TGCCTAGGCTGGAGTGCAGCGGC
seq_5,-191,CGCGGCCCGTGTGCAGAG
seq_9,-1189,TCGCCAGGCTGGAGTGCAGTGGC
seq_10,-1125,TGCCCAGGCTGGAGTGCAGTGGC
>data set
hm05r
>instances
seq_1,-463,CCGGGCGACCGCGGTG
seq_1,-210,CAGGGCGACCGCGGAG
>data set
hm06r
>instances
seq_0,-269,CCGCCTCGGGCTCCACCC
seq_0,-191,CCGCCGCGTAGCCACACC
seq_1,-136,CCGCCCCGCCCCTGCGCC
seq_1,-21,CGGCCGCGGCCAGAAAC
seq_2,-264,CCGCCGCGTTGAGAACC
seq_2,-232,CGGCCACGTGACCAGTCC
seq_3,-38,CAGCCGCGCGCCCCTTCC
seq_4,-379,CTGCCGCGGGCCGGGGCC
seq_5,-444,CGGCCTCGCCTGTGACCC
seq_5,-229,CCGCCCCGGCGCGCCTC
seq_5,-162,CCGCCCCGCGCCGCCCGCCCCGTCCGCGCACC
seq_7,-336,GCCACGACGGTCCCCC
seq_7,-206,CAGCCTCGAGTGTACACC
seq_8,-496,GCCCCGCGTCCGGACC
seq_8,-110,CCGCCCCGTCCCGACCCC
seq_8,-34,CGGCCCCGCCCTCTCCTC
>data set
hm07r
>instances
seq_1,-465,CTGAGAAGCAAA
seq_2,-610,CTGAGAAGACAA
seq_3,-923,CTGAGAAGTGAA
seq_4,-81,CTCAGAAGGGAA
>data set
hm08r
>instances
seq_0,-55,ACGTC
seq_1,-29,ATGACGTGT
seq_2,-66,CGTGACGTTT
seq_3,-240,ATGACGTCA
seq_4,-182,ATGACGTC
seq_5,-426,TGACG
seq_5,-183,CGTGACGTCA
seq_6,-257,TTACGT
seq_6,-219,TGACCTTGTCGT
seq_6,-175,TGACCT
seq_6,-142,TGACGTCA
seq_6,-124,TGACGTCA
seq_7,-198,TGACGAC
seq_8,-476,TGACAT
seq_8,-346,TGACTT
seq_8,-97,TGACAT
seq_9,-305,ACGTC
seq_9,-102,CATGACGTCT
seq_10,-113,TGACAT
seq_11,-81,GTGACGTCT
seq_12,-233,GTGACGT
seq_12,-82,TGACGGC
seq_12,-32,CGTGACGT
seq_13,-254,TGACAT
seq_13,-245,TGACTT
seq_13,-86,TGTCGT
seq_14,-253,TGGCGT
>data set
hm09r
>instances
seq_0,-1121,CGGGCTCCCGTAAGCAC
seq_0,-227,GGGCCCACGAGACCTCT
seq_0,-105,GCCCGCGCGCCACCCCT
seq_1,-232,GAGCGCCCGAGTGCTCT
seq_1,-194,CGCCCTGCCGAAGACCC
seq_2,-304,CGCACTCCCGTTTCCCCT
seq_3,-702,CGTTCGCCCGCTGGCCCT
seq_4,-1170,CGCACACCTGTAGTCCC
seq_4,-1058,CGAGATTCCGTCTCCCC
seq_5,-604,CGTCCGCCAGCACACCCGGGCCCGCT
seq_6,-486,GCCCCCACGCTCCCTCT
seq_6,-196,CGCCCGCCCGCCCGCCCT
seq_6,-83,CGCCTTCCCGCCCGCCC
seq_7,-440,GCACACACGTGTGCGCT
seq_7,-303,CGCGCTCCCGGCGCCCCT
seq_8,-373,GAGCTCCCGCCACCAC
>data set
hm10r
>instances
seq_0,-357,CAGGCTGGGCC
seq_1,-48,CGGGCTTTGGC
seq_2,-350,CCGGCTGAGTC
seq_3,-389,CAGGCTGGGAC
seq_4,-195,CCGGCTGGGCC
seq_5,-123,CGGGCTGCGGC
>data set
hm11r
>instances
seq_0,-510,CAAAGTAGCCAAT
seq_3,-741,CTGAACAGCTAAT
seq_4,-80,CCTATCAGCTGAT
seq_5,-481,CACACCAGCTAAT
seq_6,-426,CTCAACAGCCCAT
seq_7,-583,CCTATTAGCACAT
>data set
hm12r
>instances
seq_0,-150,GATCAAATTGACGTCATGGTAAAAATTGACGTCATGGTAA
>data set
hm13r
>instances
seq_0,-734,TTAACTGAAGATCCCA
seq_0,-333,AACTAAATTGCAAA
seq_1,-560,TTAACTCAAAAACGGA
seq_2,-549,TAACTAACCTGCACA
seq_3,-745,TCAACTGAACAGCTAA
seq_4,-222,TTAACTGAGGGCCTGA
seq_5,-167,TTAACTTAGATTCCCA
>data set
hm14r
>instances
seq_1,-365,CACCATGAGCTTTCCATG
seq_1,-160,CACCATGAGTCTTCCATG
>data set
hm15r
>instances
seq_1,-1915,CACACCTGTAGTCCCAGCTATTCAG
seq_2,-1168,CACACCTGTAGTCCCAGCTACTCGG
>data set
hm16r
>instances
seq_0,-2252,CCAGGCTGCAGTGCAGTGGTGCGAT
seq_1,-1886,CCAGGCTGGAGTGCAGTGCCTCTAT
seq_4,-2547,CCAGGCTGGAGTGCAGTGGCGCGAT
seq_4,-1910,CCAGGCTGGAGTGCAGTGGCGCGAT
seq_5,-2732,CCAGGCTGGAGTGCAGTGGCACGAT
seq_6,-2451,CCAGGCTGGAGTGCCGTGGCGCGAT
>data set
hm17r
>instances
seq_0,-101,ACTCGGGATCGATCTGGAACTC
seq_1,-101,ACTCGGGATCGATCTGGAGCTC
seq_2,-103,ACTCCGGATCGATCTGGAGCT
>data set
hm18r
>instances
seq_0,-330,GCCACCGCACTCCAGCCTGGG
seq_1,-2707,GCCACTGCACTCCAGCCTGGG
seq_3,-1878,GCCACTGCACTCCAGCCTGGG
>data set
hm19r
>instances
seq_0,-406,CTACCACCACCCCCAA
seq_2,-365,CTACCACCACCCACAA
>data set
hm20r
>instances
seq_2,-1432,TGTAATCCCAGC
seq_3,-1634,GCTGGGTTTACA
seq_3,-1498,GCTGGGATTACAG
seq_4,-591,CTAGGATTACA
seq_4,-457,GCTGGGATTACAG
seq_5,-1563,GGTGGGATTACAG
seq_5,-1425,CTAGGATTACA
seq_5,-1105,TGTAGTACCAGC
seq_5,-1031,GCTGTGATTACA
seq_5,-328,GCTGGCATTACA
seq_6,-1685,CTGGGATTACAG
seq_6,-750,TGTAATCCCAGC
seq_7,-1317,TGGAATCCCAG
seq_12,-1675,TGTAATCCCAGC
seq_14,-798,TGTAATCCCAGC
seq_15,-1909,TGTAGTCCCAGC
seq_15,-384,GCTGGGATTACA
seq_18,-1566,TGTAATCCCAGC
seq_19,-1614,GTTGGGATTACAG
seq_19,-1019,CTGGGAATACA
seq_19,-885,GCTGGGATTACAG
seq_21,-1409,TGTAATCCCAGC
seq_22,-1992,TGTAATCCCAGC
seq_22,-1841,TGTAGTCCCAGC
seq_22,-974,GCTGAGATTACA
seq_22,-839,GCTGGGATTACAG
seq_23,-1934,TGTAATCCCAGC
seq_24,-1516,GCTGGGATTACAG
seq_24,-1310,CTTGGATTACA
seq_24,-372,GCTGAGATTACA
seq_25,-1867,GCTGGGATTACAG
seq_25,-1731,GCTGAGATTACA
seq_29,-1370,TGTAATCCCAGC
seq_29,-1234,TGTAATCCCAGC
seq_29,-623,GCTGGGATTACA
seq_31,-1989,GCTGGGATTACAG
seq_31,-1842,GCTGGGATTACAG
seq_32,-1688,TGTAGTCCCAGC
seq_32,-1534,TGTAGTACCAGC
seq_32,-1511,TGTAATCCCAGC
seq_32,-789,GCTGGGATTACAG
seq_32,-668,CTAGGATTACA
seq_34,-1240,TGTAGTCCCAGC
seq_34,-1062,TGTAATCCCAGC
seq_34,-916,TGTAATCCCAGC
seq_34,-785,TGTAATCCCAGC
>data set
hm21r
>instances
seq_0,-527,TCCCTTTTTGGCCC
seq_1,-979,TCCCTATTTGGCC
seq_1,-403,TCCATCTGGGGCAC
seq_2,-225,TCCATATACGGCCC
seq_2,-179,TCCTTCTTTGGTC
seq_3,-315,TCCATATTAGGAC
seq_4,-100,TCCTTTTATGGCCC
>data set
hm22r
>instances
seq_0,-421,CACCTCTGTCACCTTCC
seq_1,-358,CACCTCTGTCACCTTCC
seq_3,-291,CGCCTCTGTCACCTTCC
>data set
hm23r
>instances
seq_0,-414,TGGTCA
seq_1,-489,TGGTCA
seq_2,-59,TGGTCA
seq_3,-458,TGGTCA
>data set
hm24r
>instances
seq_0,-13,GCCGCTATTAC
seq_1,-385,GCCGCCCTTTC
seq_2,-10,GCCGCCATT
seq_3,-333,GCCGGCCTTCC
seq_3,-35,GCCGGGCTT
seq_4,-16,GCCGCAGTTTC
seq_5,-99,GCCGCCGTTGTTCC
seq_6,-358,GCCGTCCTT
seq_7,-453,GCCGACTTTGC
>data set
hm25r
>instances
seq_0,-150,GATCAAATTGACGTCATGGTAAAAATTGACGTCATGGTAA
>data set
hm26r
>instances
seq_0,-622,CCCACCTCCCTCTATC
seq_1,-72,CCCGCCTCCCGCTCCC
seq_2,-593,CCCGCCTCAGGCTCCC
seq_2,-180,CCCGCCTTCTTCTCC
seq_3,-293,CGCGCCTCTGTCACC
seq_3,-225,CCCGGCTAACCTTTCC
seq_4,-906,CCCGCCTCGGCCTCCC
seq_5,-995,CCTGCCTCAGCCTCCC
seq_5,-860,CCCGCCTCAACCTCCC
seq_7,-951,CCCGCTAGTTCCTCCC
seq_7,-60,CCCGGCTCTTTCTAGC
seq_8,-563,CCCTCCTCACACTTGC
seq_8,-328,CCCGGCTCCCGCTCTC
seq_8,-26,CACGCGTCCCTCTCTC
>data set
mus01r
>instances
seq_0,-402,ACAGCTATTCTTCCAT
seq_0,-360,AGAGTTTCCGTTCCAT
seq_2,-474,ACAGCTTGCCTTCCAT
seq_2,-216,AGAGATGGCCTTGCAT
>data set
mus02r
>instances
seq_2,-896,CACATACATACACACATGCATA
seq_3,-723,CACATAGATACACACATGCTCA
seq_7,-740,ACATAAATAAATACATACATACATA
>data set
mus03r
>instances
seq_1,-14,TGGCTTCAG
seq_2,-480,TGCCTTCAG
seq_2,-72,TGGCTTCAG
seq_3,-71,TGGCTTCAG
seq_4,-293,TGCCTTCAG
>data set
mus04r
>instances
seq_0,-622,AACCAGATAT
seq_1,-442,AACTGGATA
seq_1,-37,AACAGGATAT
seq_2,-916,AACCAGATAT
seq_4,-778,AACAAGATAT
seq_5,-844,AACTGGATAT
seq_5,-430,ACTGGATAT
>data set
mus05r
>instances
seq_0,-251,ATGAATTAAAAC
seq_1,-479,ATGAGGTAAGAC
seq_2,-232,ATGACGTCAACC
seq_3,-278,ATGAGATGAATC
>data set
mus06r
>instances
seq_2,-230,ATAAGAAAGTAGAG
seq_2,-167,ATAAGAAAGTAGAG
>data set
mus07r
>instances
seq_0,-985,CACGGTGCCCAGGCACC
seq_3,-127,CACGGTGCCCGGGCAAC
>data set
mus08r
>instances
seq_0,-1500,GTGTGTGTGTGTGTGTGTGTGT
seq_0,-1468,TGTGTGCGTG
seq_0,-49,GGGTGTGCGTG
seq_1,-1349,GTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
seq_1,-693,CACCCACACA
seq_1,-682,ACAAACACACACACACCACACACACACACACACACACACACACACACACA
seq_2,-316,ACACACACACACACACACACACACACACACACACACACACACCCTC
>data set
mus09r
>instances
seq_1,-374,GAGAGGCAAGA
seq_1,-325,GAGAGGCAAGA
>data set
mus10r
>instances
seq_0,-565,GGGTGGGG
seq_0,-109,CCCGCCCC
seq_0,-74,GCCCCGCCC
seq_0,-57,CGCTCCGCCC
seq_1,-193,GGGTGGGGGTGGGGGTGGGG
seq_2,-678,CCCGCCCGCCC
seq_2,-646,CCCCGCC
seq_2,-593,CTCGGCCCCGCC
seq_2,-543,TCCGCCCC
seq_2,-73,CACTCCGCCCCGCAC
seq_2,-53,CGCTCCGCCCC
seq_3,-596,GCCCCGCCCC
seq_3,-521,CCCGCCCC
seq_3,-506,CCCCGCCCC
seq_3,-483,CACCCCGCCCTC
seq_3,-469,GCTCCGCCCCGTCC
seq_3,-446,CCCGCCC
seq_3,-97,GGGCGGGG
seq_4,-129,GCCCCGCCCCC
seq_4,-14,GGGGGGGGG
seq_5,-667,CGCGCCGCCC
seq_5,-523,CCCCGCC
seq_5,-161,GGGTGGGG
seq_6,-524,CTCAGCCC
seq_6,-134,CACTCCGCCC
seq_7,-217,CTCTGCCC
seq_7,-171,GGGAGGGG
seq_7,-125,GCTCCGCCC
seq_7,-89,CCCCGCCCCC
seq_8,-445,GGGGGGGG
seq_8,-133,CTCCGCCCCCCGCCC
seq_8,-25,CTCCGCTC
seq_9,-175,GCTCCGCCCC
seq_9,-154,CACCGCCCCC
seq_9,-12,GCCCCGCGC
seq_10,-669,GGGGGGGGGG
seq_10,-340,CTCAGCCC
seq_10,-223,CTCCGCAC
seq_11,-836,CCCCGTCCCCCGCCCCCGCCCCC
seq_11,-285,GGGCGGGGGGGAGGGG
seq_11,-89,CTCTGCCC
seq_12,-209,GGGAGGGG
>data set
mus11r
>instances
seq_0,-230,GGGCAAGGGCGGC
seq_1,-256,GTCACAGGAG
seq_1,-183,GACACCAGGG
seq_1,-130,GGCCATTCGCGAC
seq_1,-97,GCCAGTTGGGGC
seq_1,-68,GACAGCGGCGCC
seq_2,-242,GGCAGGTGAGGACATTGGAGTC
seq_2,-180,GCCAGCAGGG
seq_2,-147,GGAAATGCGCGCC
seq_3,-287,GGCAGTAGAGCC
seq_3,-242,GTGCAGAAGAGCC
seq_4,-179,GGAGAAATGAGCCGGCACAAGGG
seq_5,-496,GGCCAATGGCGGC
seq_5,-403,GGCACGTGCG
seq_5,-130,GACAGGGGTG
seq_6,-90,GGTCAGCTGTGTC
seq_7,-420,GACAGGGGAG
seq_7,-176,GGCAACAGCGGC
seq_7,-103,GCCAATGGCGAGCGGGGGC
seq_7,-20,GGCATCGGAGCC
seq_8,-104,GGCCACTGGAGCC
seq_9,-214,GTCACATGGGTC
seq_9,-191,GCCAGTCGTGCCAAAGGGG
seq_10,-482,GGACACAGGAGAC
seq_10,-391,GACAACGGGG
seq_10,-273,GACAAAGGAGAC
seq_11,-156,GGGCATTTGTGCC
seq_11,-49,GGACAGCTGTGTC
>data set
mus12r
>instances
seq_0,-176,ATGGGGGTTTAA
seq_0,-92,AAATATGTGTAA
seq_1,-253,ATTATGGTGTAA
seq_1,-95,AATCTGGTGTAA
seq_2,-423,AATTGAGTTTAA
seq_2,-260,AATGGAGTGTAA
>data set
yst01r
>instances
seq_0,-282,TTTTTTTTCGC
seq_1,-293,TTCTTTTTCTC
seq_2,-651,TTGTTTTTCAC
seq_3,-287,TTTTTTTTCTC
seq_5,-826,TTCTTTTTCCC
seq_6,-944,TTATTTTTCCC
seq_6,-347,TATTTTTTCTC
seq_7,-521,TTTTTTTTCTC
seq_8,-951,TCCTTTTTCTC
>data set
yst02r
>instances
seq_1,-418,ACCGGCGGTCTTTCGTCCG
seq_1,-328,CGGATCACTCCGAACCGA
seq_1,-210,GGAGAGCTATTGTTCAAA
seq_2,-279,CGGAGCACTGTTGAGCGAA
seq_2,-192,CGGACAACTGTTGACCG
seq_3,-174,ACCGGCGCACTCTCGCCCGAA
>data set
yst03r
>instances
seq_0,-192,CAGATTCTTATTATTAAG
seq_4,-427,CAGCTCCTCTATAATAAG
seq_5,-110,CAGATACTTCATTATCAG
seq_6,-120,CAGTTACTAGTTCATTTG
seq_7,-65,CAGCTACTGACAACTAAG
>data set
yst04r
>instances
seq_1,-344,CTTTTCTGGCATCCA
seq_2,-957,TTATCGCGCACCC
seq_3,-678,CTTTTCTGGCAACCA
seq_4,-181,CTTTTCTGGCACACA
seq_6,-755,TTTTCCGGCAGAAA
seq_6,-721,TTTTCCGGCAAGC
>data set
yst05r
>instances
seq_0,-217,CTAATTGGGTAAGT
seq_1,-327,CTAATTAGGAAACT
seq_2,-201,CTAATAGGGAAATT
>data set
yst06r
>instances
seq_5,-493,TAAGGCATCGCAC
seq_6,-154,TAAGGCATCGCAC
>data set
yst08r
>instances
seq_0,-469,GCACCCAAACA
seq_0,-20,CACACAAAC
seq_2,-634,GCACCCATACCT
seq_3,-653,CACCCAGACAT
seq_4,-614,CACACAAAC
seq_4,-453,CACCCACGC
seq_4,-409,CACCCAGACCT
seq_6,-446,CACCCAATCC
seq_6,-424,CCCCCACAC
seq_6,-333,CACCCAAGCA
seq_7,-900,CACCCAAACAT
seq_7,-437,GCACCCACACAT
seq_7,-420,CACCCAGACC
seq_8,-417,GCACCCAATCA
seq_8,-72,CACGCATAC
seq_9,-472,ACCCAGAC
seq_9,-222,CACACACTC
>data set
yst09r
>instances
seq_2,-157,TAGCCGCCGA
seq_3,-951,TAGCCTCC
seq_4,-566,TAGCCG
seq_4,-285,AGCCGC
seq_4,-250,TAGCCGC
seq_5,-184,TAGCCG
seq_6,-732,TAGCCTC
seq_6,-167,AACCGCC
seq_7,-594,AACCGCC
seq_7,-220,TAGCCACC
seq_10,-611,AGCCGCCAA
seq_11,-484,TAGCCGCCG
seq_12,-671,TAGCCG
seq_12,-245,TAGCCGCCGA
seq_13,-857,TAGCCGCC
seq_15,-826,TAGCCACC
seq_15,-448,TAGCCGCCGA