Figure S3: Top motif from PosMotif1 on samples that contain at least three genes in the SCPD database in Tompa's format

>data set
abf1_baf1
>instances
YAL038W,-837,CGTCGGTTGTGA
YBR248C,-639,CGTTGTTTGTGA
YCR012W,-514,CGTCGCTCGTGA
YFL038C,-177,CGTATATCGTGA
YGL234W,-207,CGTCGGTAGTGA
YGR059W,-314,CGTATTTAGTGA
YLR204W,-407,CGTGTTTGGTGA
YPR110C,-131,CGTTTATAGTGA
>data set
bas1_pho2
>instances
YBR093C,-249,TGGGACTAGCACAGAC
YBR248C,-382,TTCCTCTACCACTGCC
YCL030C,-304,TGCCCCCATCACAATC
YDL227C,-330,TGCTACTATCACCCAC
YGL234W,-918,TTGCACGAACACTTAC
YOR128C,-836,TTCGACCAACACTTCC
>data set
car1
>instances
YAL038W,-857,TAGCCGCC
YGR264C,-245,TAGCCGCC
YMR108W,-484,TAGCCGCC
YOL006C,-448,TAGCCGCC
YPL111W,-157,TAGCCGCC
>data set
cpf1
>instances
YCR012W,-404,CTAGCGA
YOR065W,-989,CTAGCGA
YPR167C,-948,CTAGCGA
>data set
csre
>instances
YER065C,-181,CCAGGCACATCGGAA
YKR097W,-623,CAGGCCTTGTCGGAA
YLR377C,-657,CCTGACATTTCGGTA
YNL117W,-815,CGTGTCGTAGCGGCA
YNL117W,-451,CCCGGCGAGCCGGCA
>data set
gal4
>instances
YBR018C,-192,CGGACAACTGTTGACCG
YBR019C,-251,CGGAGGGCTGTCGCCCG
YBR020W,-416,CGGAAGACTCTCCTCCG
YLR081W,-416,CGGCGGTCTTTCGTCCG
YML051W,-172,CGGCGCACTCTCGCCCG
>data set
gata
>instances
YDL210W,-425,GCTTATC
YDL210W,-418,GCTTATC
YIR032C,-38,GCTTATC
YJL110C,-165,GCTTATC
YJL110C,-155,GCTTATC
YKR034W,-228,GCTTATC
YKR039W,-550,GCTTATC
YKR039W,-294,GCTTATC
>data set
gcn4
>instances
YDR354W,-65,CAGCTACTG
YMR108W,-126,CAGCCACAG
YMR300C,-124,CAGCCACCG
YOL058W,-414,CAGCCACTG
YOL140W,-952,CAGCTACTG
YOR202W,-681,CAGCAACCG
>data set
gcr1
>instances
YAL038W,-595,CGGGATTCCT
YCR012W,-641,CGCGAATCCT
YGR254W,-229,CGTGATTCCT
YOL086C,-652,CGGGATTCCT
>data set
gln3
>instances
YDL215C,-555,CATTGGCGGCCT
YDL215C,-222,CAACGGCGGCAT
YGR019W,-412,CGTCGGCGATTT
YGR019W,-381,CGCGGGCGGGAT
YPR035W,-972,CGGCGGCGGAAT
YPR035W,-825,CAATGGCGCTTT
>data set
hap1
>instances
YGR088W,-431,CCGTTATCTCC
YJR048W,-360,CCGATCTTTCC
YML054C,-236,CCGATATCTCC
YOR065W,-505,CCGGTATTTCC
>data set
hap2_hap3_hap4
>instances
YHR051W,-849,GAGAAGATCCGCCA
YJR048W,-247,GAGCAGATCCGCCA
>data set
hse_hstf
>instances
YAL005C,-354,TTCTAGAA
YBR072W,-867,TTCTAGAA
YBR072W,-354,TTCTAGAA
YER103W,-253,TTCTAGAA
YHR053C,-229,TTCTAGAA
YMR186W,-217,TTCTAGAA
>data set
matalpha1
>instances
YPL187W,-364,TTCCTAATTAGTCCTTCAA
YPL187W,-311,TTCCTAATTAGGCCATCAA
>data set
matalpha2
>instances
YDR461W,-232,TGTAATTACCCAAAAAGGAAATT
YIL015W,-262,TGTAATTACCGTAAAAGGAAATT
YKL209C,-210,TGTAATTACCTAATAGGGAAATT
>data set
mcb
>instances
YDL102W,-166,ACGCGT
YDL164C,-125,ACGCGT
YJL194W,-204,ACGCGT
YMR199W,-606,ACGCGT
YNL102W,-801,ACGCGT
YNL102W,-208,ACGCGT
YNL102W,-173,ACGCGT
YOR074C,-158,ACGCGT
YOR074C,-121,ACGCGT
>data set
mcm1
>instances
YAL040C,-902,CCCGTTTAGGAAA
YBR160W,-925,CCATTTTTGGAAA
YBR202W,-210,CCTTATAAGGAAA
YDR146C,-317,CCTGTTTAGGAAA
YER111C,-450,CCCGTTTAGGAAA
YGL089C,-586,CCGTTTCGGGAAA
YJL157C,-413,CCAAGTAAGGAAA
YJL159W,-380,CCTATTTCGGAAA
YJL159W,-285,CCAGATCAGGAAA
YJL194W,-190,CCAGATCAGGAAA
YJL194W,-174,CCCACTTAGGAAA
YKL209C,-202,CCTAATAGGGAAA
YKR066C,-123,CCAATTTAGGAAA
YLR274W,-151,CCCTTTTAGGAAA
YNL145W,-241,CCTATTCGGGAAA
YPR113W,-181,CCTATTACGGAAA
YPR119W,-749,CCCGTTTAGGAAA
YPR119W,-687,CCGAATCAGGAAA
>data set
mig1
>instances
YBR019C,-251,CGGAGGGCTG
YBR020W,-434,CGGGCGACAG
YDR009W,-288,CGGTCCACTG
YDR146C,-621,CGGCAGTCAG
YIL162W,-948,CGGAGGTCTG
YIL162W,-752,CGGTGAGCTG
YKL109W,-763,CGGCGTTCAG
YLL043W,-215,CGGGGAACAG
YLR377C,-432,CGGACACCCG
YPL248C,-654,CGGTAAACGG
>data set
pdr3
>instances
YBL005W,-191,TCCGCGGAAT
YDR406W,-442,TCCGCGGGAT
YJL219W,-532,TCCGCGGAAT
YOL156W,-534,TCCGCGGAAT
YOR153W,-491,TCCGCGGAAT
>data set
pho2
>instances
YDL227C,-664,CATGTGCGTCACGAAAAAAGA
YDL227C,-607,CATGTGTGTCACGAAAAGTGA
>data set
pho4
>instances
YBR093C,-727,AGAAACGTG
YDR481C,-383,AGAAACGTG
YGR233C,-11,ATAAACGTG
YML123C,-265,AAAAACGTG
>data set
rap1_ebf1
>instances
YAL038W,-652,ACCCAGACA
YBR118W,-899,ACCCAAACA
YBR118W,-435,ACCCACACA
YCL030C,-818,ACGCAGACA
YCR012W,-472,ACCCAGACA
YDR050C,-19,ACACATACA
YGR085C,-237,ACCCATACA
YGR254W,-467,ACCCAAACA
YGR254W,-19,ACACAAACA
YIL033C,-71,ACGCATACA
YJL026W,-613,ACACAAACA
YJL026W,-599,ACACATACA
YJR073C,-153,ACCCACACA
>data set
reb1
>instances
YDL140C,-712,TTACCCG
YDL164C,-351,TTACCCG
YDR050C,-398,TTACCCG
YFL039C,-377,TTACCCG
YGL026C,-166,TTACCCG
YOL004W,-372,TTACCCG
YOL006C,-951,TTACCCG
YPL231W,-296,TTACCCG
>data set
rox1
>instances
YDR044W,-192,TGCTTTGCCCATTGTTCT
YDR044W,-134,TTTTCCACCTATTGTCTT
YJR047C,-291,TTTTCGCCCTATTGTTCT
YJR047C,-203,TGGTAAACTCATTGTTGT
YPR065W,-370,TCTTCCTCGTATTGTCTT
YPR065W,-202,TTATTTGCTAATTGTAGT
>data set
rp-a
>instances
YIL160C,-395,CGGGGA
YIL160C,-188,CGGGGA
YKR009C,-271,CGGGGA
YKR009C,-203,CGGGGA
>data set
scb
>instances
YDL227C,-757,CACGAAAAT
YDL227C,-432,CACGAAAAT
YDL227C,-398,CGCGAAAAT
YMR199W,-452,CTCGAAAGT
YMR199W,-435,CTCGAAAAT
YPL256C,-606,CGCGAAATT
YPL256C,-581,CACGAAATT
>data set
sff
>instances
YDR146C,-848,TACTTTCGTAC
YDR146C,-807,TAATTTTGTGC
YGR108W,-823,TAATTATGTGC
YGR108W,-50,TATTTTCGTCC
YPR119W,-380,TAATTTTGTCC
YPR119W,-161,TATTTTTGTCC
>data set
ste12_pre
>instances
YCL027W,-187,ATGAAACA
YDR461W,-749,ATGAAACA
YFL026W,-324,ATGAAACA
YFL026W,-198,ATGAAACA
YNL145W,-196,ATGAAACA
>data set
taf
>instances
YJL166W,-100,CTCTCGAACATT
YJR048W,-684,CTCGAGAACAAT
YOR063W,-298,CTCACGCACACT
YPR191W,-573,CTCGCGCACACT
>data set
tata_tbp
>instances
YBR093C,-563,CGCCGGAGACCG
YDL210W,-408,CGCCAAAAACCG
YJL153C,-511,CGCCGTAGACCG
YPL256C,-529,CGCCAAAAACCG
>data set
uascar
>instances
YLR438W,-193,CCCCTGCCGTTAGCGGC
YLR438W,-152,CCCTTGCCCTTAGCGGC
>data set
uash
>instances
YDR285W,-22,TCGGCGGCTA
YER044C,-98,TGGGCGGCTA
YHR153C,-90,TGGGCGGCTA
YHR157W,-93,TTGGCGGCTA
YIL072W,-173,TGGGCGGCTA
YMR133W,-94,TGGGCGGCTA
YOR351C,-136,TCGGCGGCTA
>data set
uasphr
>instances
YDL200C,-74,CGGCGCTA
YBR114W,-92,CGACGTAA
YDR217C,-508,CGACGAAA
YEL037C,-546,CGACGGCA
YER095W,-811,CGTCGGTA
YER095W,-670,CGACGATA
YER142C,-144,CGACGGGA
YER162C,-118,CGGCGGAA
YGL058W,-538,CGTCGCTA
YJL026W,-777,CGACGAAA
YJR035W,-493,CGTCGACA
YJR052W,-493,CGACGATA
YML032C,-966,CGACGACA
YML032C,-223,CGTCGCTA
YNL250W,-15,CGACGGAA
YOR386W,-498,CGGCGCTA
YPL022W,-964,CGTCGTAA
>data set
uis
>instances
YIR028W,-570,TTTGCGCCTATTCGATGATC
YIR029W,-236,TTTGAGCCTATCAGAACTCC
YIR031C,-635,TTTGTGCCTATGGGGAGAAC
>data set
urs1h
>instances
YDR285W,-20,GGCGGCTA
YER044C,-96,GGCGGCTA
YHR153C,-88,GGCGGCTA
YHR157W,-91,GGCGGCTA
YIL072W,-171,GGCGGCTA
YJL106W,-550,GGCGGCTA
YMR133W,-92,GGCGGCTA
YOR351C,-148,GGCGGCTA
YOR351C,-134,GGCGGCTA