Figure S5: Top motif from PosMotif1 on samples from the ABS database in Tompa's format

>data set
aml
>instances
M26179,-234,CCCCGTGACGTCACCCGGAGCCCGGGC
X05831,-166,CCCCGTGACGTCACCCGGACTCCGGCC
>data set
ap1
>instances
extracted50,-107,CCACGTAAGCATGTTTAC
extracted51,-123,CCATGTAAGCATGTTTAC
K00650,-300,CTGCGTCAGCAGGTTTCC
M23768,-293,CTGCGTCAGCAGGTTTCC
>data set
ap2
>instances
U32675,-77,GGGGGCGGGCGGGGGCG
L06620,-59,GTGGGCGGGCGGGGGCG
M26179,-202,GGGCGCGGTCGGCTGCG
X05831,-134,GCGCGCGGTCGGCCGCG
>data set
ap2a
>instances
U34070,-373,CCCCCACCCCTACCCCGTGCA
U36308,-437,CCCCAACCCTTACCCCTGGCA
extracted15,-411,CCCCCACCCTTAACCCCAATA
>data set
caat
>instances
Y00474,-70,GAAAGTTGCCTTTTATGG
V01217,-73,GAAAGTTGCCTTTTATGG
X00182,-68,GAAAGTTTCCTTTTATGG
M61126,-108,GGGCGTGGCCTTCTGGGG
M29660,-128,GGGCGTGGCCTTTTGGGG
L36125,-127,GGGCGTGGCCTTTTGGGG
extracted56,-38,GGAGGTCACTTTATAAGG
extracted57,-58,GAAGGTCACTTTATAAGG
extracted58,-53,GAAGGTCACTTTATAAGG
>data set
cebp
>instances
M18472,-327,ACACACCCCATGGACTGG
extracted46,-325,ACACACCCCATGGACTGG
X76685,-420,ACTCACTCTATAGACTAG
extracted48,-347,ACTCACTCTATAGACTAG
>data set
cets
>instances
AY008847,-38,AGGAGTAGAGTATATAAGTTCCAG
D63333,-96,AGGAGTAGAGTATATAAGCACCAG
>data set
cjun
>instances
J04111,-45,TGACTGGTAGCAGATA
X57155,-52,TGACTGGTAGCAGATA
J02971,-68,TGATTGTTAGAAATTA
D14461,-66,TGATTGTTAGCAATTA
>data set
cmyc
>instances
AF224272,-157,CAAGCGGTCACGTG
AF224272,-137,CAACAGATCACGTG
extracted29,-206,CAAGGGGTCACGTG
extracted29,-186,CAACAGGTCACGTG
>data set
coup
>instances
U81851,-168,GCAGCTATGTACATGTTGGAGA
M63800,-152,GCAGCTATGTACATGTTAGACA
>data set
creb
>instances
K03021,-129,ATTCCTGCGATTCAATGA
M26065,-188,ATTCCTGTGATTCGATGA
M31184,-200,ATTCCTGTGATTCGATGA
X56849,-121,AATCCTGGGAGTTGGTGA
X56850,-92,AATCCTGGGAGTTGGTGA
>data set
cutl
>instances
extracted54,-28,GCTGGGACTGTCACTCATTCTCCGATC
extracted55,-44,GCTGGGACTGTCACTCATTCTCCGCTC
>data set
e2
>instances
X00371,-376,CCAAGCTTAGAAACATGACAGGTCC
extracted09,-396,CCAAGCTTAGAAACATGACAAGTCC
>data set
e2f
>instances
X57138,-89,AGAGGAAGCTGCAAGCT
D43966,-319,AGAGGTAGCTCCAAGCT
>data set
e2f1
>instances
extracted33,-63,GGCGGGCCGGGGCC
extracted34,-208,GGCGGGACGGGGCC
X00855,-123,GGGGGGGCGGGGCC
extracted35,-439,GTGGGGGCGGGGCC
extracted35,-343,GTGGGGGCGGGGCC
extracted36,-300,GGCGGGGCGGGGCC
extracted37,-278,GAAGGGGCGGGGCC
>data set
e47
>instances
D88270,-236,TCCAGCAGGTGCTTCCTCCCTGAATGCTTCCAT
extracted47,-98,TCCAGCAGGTGCTTCCTCCCAGAATGCTTCCCT
>data set
egr1
>instances
U34070,-198,GCTGGAGGCGGTGGGCG
M62362,-212,GCAGGAGTCAGTGGGCG
U32675,-93,GGCGGAGACAGTGGGCG
L06620,-69,GGCGGAGACAGTGGGCG
>data set
ets1
>instances
S54531,-323,TGTAAGTAGGTAGGC
extracted01,-326,TGAAAGTATGTAGGC
extracted50,-374,TGGAAGTAAACATGC
extracted51,-198,TGAAAGTAGAGATGC
>data set
fxr
>instances
AJ250902,-67,TGACTTAGGGGCTGAGCCT
U00938,-64,TGACTTTGGGGCTGAGCCT
AF044316,-101,TGACTTCTGGAGTCAAGGT
AF044315,-102,TGACTTCTGGAGTCAAGGT
>data set
gata3
>instances
AF377331,-111,TCAAGATGAGTAAAGATGTGGTTTCTAGATAGT
L13028,-108,TCAAGATGAGTAAAGATGTGGTTTTCAGATAAT
>data set
gata6
>instances
U72959,-197,CAGTTGTAATTAGCACCCCGGGTGTCAGCCAGAAAC
S77762,-171,CAGTTGTAATTAGCACCCCAGGTGTCAGTCAGAAAC
>data set
gc
>instances
U68061,-184,GATAACCTGAATCAATATTTCC
AF221746,-188,GATAACCTGAATCAATATTTCC
>data set
gr
>instances
extracted25,-59,AAGGTTACTAGTTAACAGGCATTGCCTGAAAAG
extracted26,-65,AAGGTTACTAGTTAACAGGCATCCCTTAAACAG
J02816,-64,AAGGTTACTAGTTAACAGACATCACTTAAAAAG
>data set
hif1
>instances
X13323,-80,AGTGGGTGGGGCTGGAACATGAGTTC
M33961,-78,AGTGGGTGGGGCTGGAACATGAGTTC
>data set
hltf
>instances
X13323,-80,AGTGGGTGGGGCTGGAACATGAGTTC
M33961,-78,AGTGGGTGGGGCTGGAACATGAGTTC
>data set
hmgi
>instances
V00534,-319,AAATGACATAGGAAAACT
V00534,-292,AAGTGAAAGTGGGAAATT
M27481,-192,AAATGACAGAGGAAAACT
M27481,-165,AACTGAAAGTGGGAAATT
>data set
hnf1
>instances
AF051355,-224,GTTAATCAT
U57552,-225,GTTAATAAT
M17156,-209,GTTAATGAT
M60197,-182,GTTAATGAT
M11844,-101,GTCAATAAT
M19524,-102,GTCAATAAT
AF093878,-427,GTGAATGAT
extracted19,-63,GTTAATAAT
extracted18,-63,GTTAATGAT
extracted25,-127,GTTAATTAT
extracted26,-128,GTTAATTAT
J02816,-127,GTTAATTAT
U72959,-395,GTCAATGAT
S77762,-372,GTCAATGAT
>data set
hnf3
>instances
M11844,-139,TATTTGTATGGGTTAC
M19524,-140,TATTTGTGTAGGTTAC
X76685,-173,TGTTTGTTTTAGTTAC
extracted48,-95,TGTTTGTTTTAGTTAC
>data set
hnf3b
>instances
AF051355,-123,ACTGGTGATGCACCTTTGAT
U57552,-129,ACTGATGATGCACCTTTGAT
>data set
hnf4
>instances
AF051355,-231,TGCCAAAGTTAATCATTGG
U57552,-232,TGCCCAAGTTAATAATTTG
M11844,-108,TGACTAAGTCAATAATCAG
M19524,-109,TGACTAAGTCAATAATCAG
>data set
hnf6
>instances
U72959,-167,AGAAACCAACAAACAGCCA
S77762,-141,AGAAACCAACAAACAGCCA
X76685,-124,AGTAACCTTGAAACACCGA
extracted48,-46,AGTAACCTTGAAACACCGA
>data set
hox
>instances
extracted54,-28,GCTGGGACTGTCACTCATTCTCCGATC
extracted55,-44,GCTGGGACTGTCACTCATTCTCCGCTC
>data set
hp1
>instances
extracted25,-59,AAGGTTACTAGTTAACAGGCATTGCCTGAAAAG
extracted26,-65,AAGGTTACTAGTTAACAGGCATCCCTTAAACAG
J02816,-64,AAGGTTACTAGTTAACAGACATCACTTAAAAAG
>data set
hsf1
>instances
extracted39,-216,GAAGACTCTGGAGAGTTC
extracted39,-133,GAAAACCCTGGAATATTC
extracted40,-227,GAAACCTCTGGAGAGTTC
extracted40,-146,GAAACTGCTGGAAGATTC
>data set
ipf1
>instances
S99616,-239,GTTAAGACTCTAATGACCC
X04724,-217,GTTAAGACTCTAATTACCC
>data set
irf
>instances
X76685,-327,AACACCTAGAAGCTAAAGAGA
X76685,-113,AACACCGAGGCCCTCATGCCA
extracted48,-250,AACACCAAGAGACTAAAGAGA
extracted48,-35,AACACCGAGGCCCTCATGTCA
>data set
m1
>instances
extracted41,-183,CACAGCGGACCCGAAGA
extracted41,-147,CCCAGCTGACCCAGGGA
M24410,-127,CACAGCAGACCCAAAGA
M24410,-91,CCCAGCTGACCCAGGGA
>data set
maz
>instances
extracted31,-415,GCGCGTAGTTAATTCATGCGGC
extracted32,-223,GCGCGCAGTTAATTCATGCTGC
>data set
mef2
>instances
extracted07,-31,GGGTTTAAATGGCACCCAGCAGTTGGCG
X71910,-36,GGGTTTAAATGGCACCCAGCAGTTGGTG
extracted08,-50,GGGTTTAAATGGCACCCAGCAGTTGGCG
X85744,-33,GGGTTTAAATGGCACCGAGCAGTTGGCG
>data set
mef3
>instances
X12447,-37,AGGAGCTGCCTTATAACC
X04260,-40,AGGAGCTGCCTTATAACC
>data set
mitf
>instances
X16073,-309,ACTACCTCTCATTTGCAAGGTC
D00439,-222,ACTACTTCTCATTTGCAAATTC
>data set
mtf1
>instances
X15128,-39,CGTCCAACGACTATAAAGAGGGCAGGCTGTCC
extracted10,-43,CGTCCAACGACTATAAAGAGAGCAGACTGTCC
>data set
myb
>instances
X75755,-193,GGGCGGGGCGCGCGGC
X75755,-126,GGGTGGCGCGGGCGCC
extracted17,-139,GGGCGGGGCGCGCGGC
extracted17,-73,GGGTGGCGCGGGCGCC
>data set
myf
>instances
U18131,-182,GCTGTAATCACTTTGGGAGACTGATGCTCCATGACAGCTAGAAGTTGGATTGAGTTTCAGTAGCTACTATATATAAAGCTGGGTCGACTTAT
M84685,-92,GCTGTAATCACTTTGGGAGACTGATGCTCCATGACAGCTAGAAGTTGGATTGAGTTTCAGTAGCTACTATATATAAAGCTGGGTCGACTTAT
>data set
myod
>instances
extracted07,-31,GGGTTTAAATGGCACCCAGCAGTTGGCG
X71910,-36,GGGTTTAAATGGCACCCAGCAGTTGGTG
extracted08,-50,GGGTTTAAATGGCACCCAGCAGTTGGCG
X85744,-33,GGGTTTAAATGGCACCGAGCAGTTGGCG
>data set
mzf1
>instances
S66422,-191,TTTCCTCCTCCTCC
S66422,-176,TCTCCTCCTCCTCC
extracted30,-201,TTTCCTCCTCCTCC
extracted30,-177,TCTCCTCCTCCTCC
>data set
nf1
>instances
M26179,-234,CCCCGTGACGTCACCCGGAGCCCGGGC
X05831,-166,CCCCGTGACGTCACCCGGACTCCGGCC
>data set
nfat
>instances
extracted21,-50,TTAATCATTTC
X03020,-53,TTAATCATTTC
X00695,-402,TTATTCTTTTC
X52618,-405,TTATTCTTTTC
J02971,-55,TTATTCATTTC
D14461,-53,TTATTCATTTC
>data set
nfkb
>instances
extracted21,-48,AATCATTTCCTCT
X03020,-51,AATCATTTCCTCT
AY008847,-216,AGTCATTTCCTCT
D63333,-281,AGTCATTTCCTCT
X00695,-400,ATTCTTTTCATCT
X52618,-403,ATTCTTTTCATCT
>data set
nfy
>instances
M29549,-62,ATAGGTGATGAGGTTTATTTGCATATTTC
M63335,-61,ATAGGTGATGAGTCTTATTTGCATATTTC
>data set
nkx2
>instances
extracted25,-57,GGTTACTAGTTAACA
extracted26,-63,GGTTACTAGTTAACA
J02816,-62,GGTTACTAGTTAACA
AF023131,-46,GGATACCGGTTAAAA
AF025766,-38,GGATACCGGTTAAAA
>data set
nrl
>instances
extracted56,-155,TGTCACCTTGGCCCCTCT
extracted57,-164,TGTCACCTTGGCCCCTCT
extracted58,-159,TGTCACCTTGGCCCCTCT
>data set
oct
>instances
L10616,-176,ATCTTGAGTACTAGAAAGTCATGGATGA
extracted12,-161,ATCTTGAGTACTAGAAAGTGATGAATAA
>data set
olf1
>instances
extracted11,-299,TTGCCACAGCAATTG
extracted11,-19,TGGCAGCAGCACTTG
extracted22,-267,TTGCCACAGCAGTTG
extracted22,-19,TCGCTGTAGCACTTG
>data set
p53
>instances
M21487,-183,CAGCCCATACAAGGCCATGGGGCTGGGC
M21390,-182,CAGCCCATACAAGGCCATGGGGCTGGGC
>data set
pou1f1
>instances
extracted13,-299,AGTATCCTACCCTTGGAT
X12967,-328,AGTATCCTACCCCTGGAT
X00368,-144,AATAAAATACCATTTGAT
V01244,-146,AATAAAATACCATTTGAT
>data set
pou2f1
>instances
X00695,-274,GAAAAACTGTTTCATACAGAA
X00695,-86,GAAAATATGTGTAATATGTAA
X52618,-284,GAAAATTTGTTTCATACAGAA
X52618,-94,GAAAATATGTGTAATATGTAA
>data set
rar
>instances
X56849,-121,AATCCTGGGAGTTGGTGAT
X56850,-92,AATCCTGGGAGTTGGTGAT
X74153,-297,AATACTGAGTGTTTGTTTT
M16400,-295,AATACTGAGTGTTTGTTTT
>data set
rfx1
>instances
J04718,-337,ACTTTCACTTTCGTGGC
extracted42,-269,ACTTCCACTTCCGTGGC
>data set
rxr
>instances
extracted49,-352,TTCTGTATGATCTCTGT
extracted49,-199,TACAGAATGTTATTTGT
M29301,-315,TTCTGTATGATCTCTGT
M29301,-162,TGCAGAATGTTCTTTGT
>data set
smad
>instances
AJ404961,-227,CGGCGAGCCCTGGGCAC
AJ404961,-71,CGCCGAGCGCTCGGCCC
AF156727,-175,CGGCGAGCCCTGGGCAC
AF156727,-26,CGCCGAGCGCTCGGCCC
>data set
sp1
>instances
extracted04,-152,GGGCGGGG
X67686,-151,GGGCGGGG
extracted05,-155,GGGCGGGG
U43589,-102,GGGCGGGG
L11910,-155,GGGCGGGG
AF004877,-305,GGGCGGGG
S54531,-49,GGGCGGGG
U32675,-100,GGGCGGGG
U32675,-81,GGGCGGGG
U32675,-71,GGGCGGGG
L06620,-76,GGGCGGGG
L06620,-53,GGGCGGGG
extracted14,-17,GGGCGGGG
M13792,-199,GGGCGGGG
M13792,-194,GGGCGGGG
M13792,-151,GGGCGGGG
extracted16,-106,GGGCGGGG
extracted16,-57,GGGCGGGG
X69723,-109,GGGCGGGG
X00855,-127,GGGCGGGG
X00855,-119,GGGCGGGG
X00855,-84,GGGCGGGG
extracted35,-435,GGGCGGGG
extracted35,-339,GGGCGGGG
extracted40,-81,GGGCGGGG
AB029557,-241,GGGCGGGG
M26179,-158,GGGCGGGG
M26179,-153,GGGCGGGG
X05831,-105,GGGCGGGG
>data set
srf
>instances
extracted04,-101,ACACCCAAATATG
X67686,-100,ACACCCAAATATG
extracted05,-108,ACACCCAAATATG
M13631,-95,ACACCCAAATATG
extracted06,-121,ACAACCTTATATG
M86232,-121,ACAGCCTTATATG
M86233,-121,ACAGCCTTATATG
>data set
stat3
>instances
L05078,-231,CTCGGGGCGGGCCCGC
L05078,-210,CCCGGGGCGGTGGCGC
X72020,-230,CACGGGGCGGGCCCGC
X72020,-208,CCCGGGGCGGTGGCGC
>data set
tbp
>instances
extracted04,-30,TATAAA
X67686,-31,TATAAA
extracted05,-39,TATAAA
U34070,-30,TATAAA
M62362,-40,TATAAA
AF004877,-33,TATAAA
extracted24,-92,TATAAA
S99616,-45,TATAAA
X04724,-24,TATAAA
AF188709,-465,TATAAA
AF188709,-457,TATAAA
AF188709,-444,TATAAA
AF188709,-27,TATAAA
AF249274,-27,TATAAA
S54531,-165,TATAAA
S54531,-15,TATAAA
extracted01,-64,TATAAA
AF221746,-204,TATAAA
M13483,-31,TATAAA
M26773,-31,TATAAA
extracted50,-31,TATAAA
extracted51,-47,TATAAA
Y00474,-29,TATAAA
V01217,-32,TATAAA
X00182,-27,TATAAA
U18131,-111,TATAAA
M84685,-21,TATAAA
X00371,-33,TATAAA
extracted09,-87,TATAAA
X15128,-442,TATAAA
X15128,-28,TATAAA
extracted10,-465,TATAAA
extracted10,-32,TATAAA
extracted13,-30,TATAAA
X12967,-56,TATAAA
U36308,-31,TATAAA
extracted15,-31,TATAAA
X75755,-94,TATAAA
extracted17,-41,TATAAA
extracted25,-24,TATAAA
extracted26,-30,TATAAA
J02816,-29,TATAAA
X00695,-24,TATAAA
X52618,-32,TATAAA
X13323,-31,TATAAA
M33961,-29,TATAAA
AF044316,-47,TATAAA
AF044315,-50,TATAAA
AB004306,-8,TATAAA
J04500,-28,TATAAA
X57138,-32,TATAAA
X73536,-55,TATAAA
M84340,-32,TATAAA
AF377331,-32,TATAAA
L13028,-30,TATAAA
X74153,-34,TATAAA
M16400,-30,TATAAA
extracted49,-65,TATAAA
M29301,-452,TATAAA
M29301,-27,TATAAA
U81851,-28,TATAAA
M63800,-365,TATAAA
M63800,-28,TATAAA
X00368,-28,TATAAA
V01244,-30,TATAAA
>data set
tef1
>instances
extracted04,-117,GGGGCTCTAGTGCCCAAC
X67686,-116,GGGACTCTAGTGCCCGAC
extracted05,-124,GGGACTCTAGTGCCCAAC
Z20656,-159,GGGGCCCTGCTGTCCTCC
M62404,-159,GGGGCCCTGCTGTCCTCC
extracted13,-352,GAGGCTCTGTTGCCCCTC
X12967,-378,GAGGCTCTGTTGCCCCTC
>data set
usf
>instances
extracted56,-36,AGGTCACTTTATAAGGGTCTGGGGGGG
extracted57,-56,AGGTCACTTTATAAGGGTCTGGGGGGG
extracted58,-51,AGGTCACTTTATAAGGGTCTGGGGGGG
>data set
vdr
>instances
U60669,-161,CTCACCTCGCTGACTCCATCCTCCTTCCAC
L04608,-143,CTCACCTCGCTGACTCCATCCTCTTCCCAC