Figure S6: Top motif from PosMotif2 on samples from the ABS database in Tompa's format

>data set
aml
>instances
M26179,-234,CCCCGTGACGTCACCCGGAGCCCGGGC
X05831,-166,CCCCGTGACGTCACCCGGACTCCGGCC
>data set
ap1
>instances
extracted50,-107,CCACGTAAGCATGTTTAC
extracted51,-123,CCATGTAAGCATGTTTAC
K00650,-300,CTGCGTCAGCAGGTTTCC
M23768,-293,CTGCGTCAGCAGGTTTCC
>data set
ap2
>instances
U32675,-77,GGGGGCGGGCGGGGGCGCTG
U32675,-36,GCGGGGGGCCGGAGGCG
L06620,-59,GTGGGCGGGCGGGGGCGCCG
L06620,-19,GCGGGGGGCCGGAGGCG
M26179,-202,GGGCGCGGTCGGCTGCGGCG
M26179,-178,GCGGGCGGGCGGGTGGG
X05831,-134,GCGCGCGGTCGGCCGCGCTG
>data set
ap2a
>instances
U34070,-373,CCCCCACCCCTACCCCGTGCA
U36308,-437,CCCCAACCCTTACCCCTGGCA
extracted15,-411,CCCCCACCCTTAACCCCAATA
>data set
caat
>instances
extracted24,-140,GGTGGAGACGTTTTTGG
Y00474,-70,GAAAGTTGCCTTTTATGGCTC
V01217,-73,GAAAGTTGCCTTTTATGGCTC
X00182,-432,GGAGGTGACTTCAAGGGG
X00182,-68,GAAAGTTTCCTTTTATGG
M61126,-108,GGGCGTGGCCTTCTGGGG
M29660,-469,GGACCTGACATTTGGCGG
M29660,-128,GGGCGTGGCCTTTTGGGG
M29660,-78,GGGCGTGTCCTATGGCGG
L36125,-499,GGACCTGACATTTGGCGG
L36125,-127,GGGCGTGGCCTTTTGGGG
L36125,-77,GGGCGTGGCCATGGCGGG
X75755,-141,GAAGGTTTCATTTCCGGG
X75755,-119,GCGGGCGCCATTTTGTGAGG
X75755,-28,GTCCGTGCTGTTCTGCGG
extracted17,-64,GGGCGCCATTTTGTAAGG
extracted56,-38,GGAGGTCACTTTATAAGGGTC
extracted57,-58,GAAGGTCACTTTATAAGGGTC
extracted58,-53,GAAGGTCACTTTATAAGGGTC
>data set
cebp
>instances
M18472,-327,ACACACCCCATGGACTGG
extracted46,-325,ACACACCCCATGGACTGG
X76685,-420,ACTCACTCTATAGACTAG
extracted48,-347,ACTCACTCTATAGACTAG
>data set
cets
>instances
AY008847,-38,AGGAGTAGAGTATATAAGTTCCAG
D63333,-96,AGGAGTAGAGTATATAAGCACCAG
>data set
cjun
>instances
J04111,-45,TGACTGGTAGCAGATA
X57155,-52,TGACTGGTAGCAGATA
J02971,-337,TGTATTTTAGCATAAA
J02971,-68,TGATTGTTAGAAATTA
D14461,-66,TGATTGTTAGCAATTA
>data set
cmyc
>instances
AF224272,-212,GGCAGCCAGTCACGTG
AF224272,-159,GTCAAGCGGTCACGTG
AF224272,-137,CAACAGATCACGTG
extracted29,-262,GGCAGCCAGTCACGTG
extracted29,-208,GTCAAGGGGTCACGTGG
extracted29,-186,CAACAGGTCACGTGG
extracted29,-32,CAGCTGGTCACATG
>data set
coup
>instances
U81851,-168,GCAGCTATGTACATGTTGGAGA
M63800,-152,GCAGCTATGTACATGTTAGACA
>data set
creb
>instances
K03021,-129,ATTCCTGCGATTCAATGA
M26065,-188,ATTCCTGTGATTCGATGA
M31184,-200,ATTCCTGTGATTCGATGA
X56849,-121,AATCCTGGGAGTTGGTGA
X56850,-92,AATCCTGGGAGTTGGTGA
>data set
cutl
>instances
extracted54,-149,CGGCGTGGTGGAAGGACACAGTGAGGTTCTCACCCCCGCCCCC
extracted54,-55,GGATCTCCGAGTTGCGAGTGTGCTGAGGCTGGGACTGTCACTCATTCTCCGATCA
extracted55,-166,CGGCGTGGTGGAAGGACACAGTGAGGCTCTCACCTCCGCCCCC
extracted55,-71,GGATCTCCGAGTTGCGAGTGTGCTGAGGCTGGGACTGTCACTCATTCTCCGCTCA
>data set
e2
>instances
X00371,-376,CCAAGCTTAGAAACATGACAGGTCC
extracted09,-396,CCAAGCTTAGAAACATGACAAGTCC
>data set
e2f
>instances
X57138,-89,AGAGGAAGCTGCAAGCT
D43966,-319,AGAGGTAGCTCCAAGCT
>data set
e2f1
>instances
extracted33,-165,GTGGAGGGGCGGGTCC
extracted33,-134,GACGGGGCGGGAC
extracted33,-63,GGCGGGCCGGGGCC
extracted34,-276,GCGACGGGGCGGGCCC
extracted34,-208,GGCGGGACGGGGCC
X00855,-125,GCGGGGGGGCGGGGCC
extracted35,-439,GTGGGGGCGGGGCC
extracted35,-391,GTAGGGGCGGAGCC
extracted35,-343,GTGGGGGCGGGGCC
extracted36,-305,GTCGGGGCGGGGCGGGGCC
extracted37,-280,GTGAAGGGGCGGGGCC
>data set
e47
>instances
D88270,-236,TCCAGCAGGTGCTTCCTCCCTGAATGCTTCCAT
extracted47,-98,TCCAGCAGGTGCTTCCTCCCAGAATGCTTCCCT
>data set
egr1
>instances
U34070,-200,GCGCTGGAGGCGGTGGGCG
M62362,-214,GCGCAGGAGTCAGTGGGCG
U32675,-95,GGGGCGGAGACAGTGGGCG
L06620,-71,GGGGCGGAGACAGTGGGCG
>data set
ets1
>instances
S54531,-323,TGTAAGTAGGTAGGC
extracted01,-326,TGAAAGTATGTAGGC
extracted50,-374,TGGAAGTAAACATGC
extracted51,-198,TGAAAGTAGAGATGC
>data set
fxr
>instances
AJ250902,-67,TGACTTAGGGGCTGAGCCT
U00938,-64,TGACTTTGGGGCTGAGCCT
AF044316,-101,TGACTTCTGGAGTCAAGGT
AF044315,-102,TGACTTCTGGAGTCAAGGT
>data set
gata3
>instances
AF377331,-111,TCAAGATGAGTAAAGATGTGGTTTCTAGATAGT
L13028,-108,TCAAGATGAGTAAAGATGTGGTTTTCAGATAAT
>data set
gata6
>instances
U72959,-197,CAGTTGTAATTAGCACCCCGGGTGTCAGCCAGAAAC
S77762,-171,CAGTTGTAATTAGCACCCCAGGTGTCAGTCAGAAAC
>data set
gc
>instances
U68061,-184,GATAACCTGAATCAATATTTCC
AF221746,-188,GATAACCTGAATCAATATTTCC
>data set
gr
>instances
extracted25,-59,AAGGTTACTAGTTAACAGGCATTGCCTGAAAAG
extracted26,-65,AAGGTTACTAGTTAACAGGCATCCCTTAAACAG
J02816,-64,AAGGTTACTAGTTAACAGACATCACTTAAAAAG
>data set
hif1
>instances
X13323,-80,AGTGGGTGGGGCTGGAACATGAGTTC
M33961,-78,AGTGGGTGGGGCTGGAACATGAGTTC
>data set
hltf
>instances
X13323,-80,AGTGGGTGGGGCTGGAACATGAGTTC
M33961,-78,AGTGGGTGGGGCTGGAACATGAGTTC
>data set
hmgi
>instances
V00534,-319,AAATGACATAGGAAAACT
V00534,-292,AAGTGAAAGTGGGAAATT
M27481,-192,AAATGACAGAGGAAAACT
M27481,-165,AACTGAAAGTGGGAAATT
>data set
hnf1
>instances
AF051355,-226,AAGTTAATCATT
AF051355,-155,GTAAATCA
U57552,-227,AAGTTAATAATT
U57552,-161,GTAAATCA
M17156,-251,GAAAATAAT
M17156,-211,AAGTTAATGATT
M60197,-184,AAGTTAATGATT
M11844,-128,GTTACTTATT
M11844,-103,AAGTCAATAAT
M19524,-368,GGAAATCAT
M19524,-129,GTTACTTATT
M19524,-104,AAGTCAATAAT
AJ245369,-134,AGTAAAAGAT
S56304,-162,GTGAATCA
S85346,-465,AGTTAATCA
Y18062,-422,GTGAAGTAT
D87674,-77,AGTCAAACAT
AF093878,-451,GGAAATGAT
AF093878,-428,AGTGAATGAT
AF093878,-58,AATCAATCAT
X04724,-322,GGGAATGAT
extracted19,-356,GTTAGTAATT
extracted19,-64,AGTTAATAAT
extracted18,-63,GTTAATGAT
extracted25,-291,AATTAATTAT
extracted25,-127,GTTAATTATT
extracted26,-264,AATGAATTAT
extracted26,-246,GGAAATAAT
extracted26,-128,GTTAATTATT
J02816,-127,GTTAATTATT
U72959,-397,AAGTCAATGATT
S77762,-374,AAGTCAATGAT
>data set
hnf3
>instances
M11844,-231,TTTGTTTTGGTGACCTA
M11844,-141,CATATTTGTATGGGTTACTTA
M19524,-142,CATATTTGTGTAGGTTACTTA
X76685,-175,CCTGTTTGTTTTAGTTACGAA
extracted48,-449,TTAGTTTTGGTTACTAA
extracted48,-97,CCTGTTTGTTTTAGTTACGAA
>data set
hnf3b
>instances
AF051355,-199,ATGGCCGATCAGGCTGTTTTTGTGTGCCTGTTTTTCTATTTTACGTAAATCACCCTGAACATGTTTGCATCAACCTACTGGTGATGCACCTTTGATC
U57552,-205,ATGGCCGATCAGGCTGTTTTTGTGTGCCTGTTTTGCTATTTTACGTAAATCACCCTGAACATGTTTGCATCAACCTACTGATGATGCACCTTTGATC
>data set
hnf4
>instances
AF051355,-231,TGCCAAAGTTAATCATTGG
U57552,-232,TGCCCAAGTTAATAATTTG
M11844,-108,TGACTAAGTCAATAATCAG
M19524,-109,TGACTAAGTCAATAATCAG
>data set
hnf6
>instances
U72959,-167,AGAAACCAACAAACAGCCAAATCC
S77762,-141,AGAAACCAACAAACAGCCAAATCC
X76685,-124,AGTAACCTTGAAACACCGAGGCCC
extracted48,-46,AGTAACCTTGAAACACCGAGGCCC
>data set
hox
>instances
extracted54,-149,CGGCGTGGTGGAAGGACACAGTGAGGTTCTCACCCCCGCCCCC
extracted54,-55,GGATCTCCGAGTTGCGAGTGTGCTGAGGCTGGGACTGTCACTCATTCTCCGATCA
extracted55,-166,CGGCGTGGTGGAAGGACACAGTGAGGCTCTCACCTCCGCCCCC
extracted55,-71,GGATCTCCGAGTTGCGAGTGTGCTGAGGCTGGGACTGTCACTCATTCTCCGCTCA
>data set
hp1
>instances
extracted25,-59,AAGGTTACTAGTTAACAGGCATTGCCTGAAAAG
extracted26,-65,AAGGTTACTAGTTAACAGGCATCCCTTAAACAG
J02816,-64,AAGGTTACTAGTTAACAGACATCACTTAAAAAG
>data set
hsf1
>instances
extracted39,-216,GAAGACTCTGGAGAGTTCTGAGC
extracted39,-133,GAAAACCCTGGAATATTCCCGAC
extracted40,-350,GATCTTTCTTGTCCATTC
extracted40,-227,GAAACCTCTGGAGAGTTCTGGAC
extracted40,-146,GAAACTGCTGGAAGATTCCTGGC
>data set
ipf1
>instances
S99616,-239,GTTAAGACTCTAATGACCC
X04724,-217,GTTAAGACTCTAATTACCC
>data set
irf
>instances
X76685,-327,AACACCTAGAAGCTAAAGAGA
X76685,-113,AACACCGAGGCCCTCATGCCA
extracted48,-250,AACACCAAGAGACTAAAGAGA
extracted48,-35,AACACCGAGGCCCTCATGTCA
>data set
m1
>instances
extracted41,-185,CGCACAGCGGACCCGAAGA
extracted41,-149,CACCCAGCTGACCCAGGGA
M24410,-129,CACACAGCAGACCCAAAGA
M24410,-93,CACCCAGCTGACCCAGGGA
>data set
maz
>instances
extracted31,-415,GCGCGTAGTTAATTCATGCGGC
extracted32,-223,GCGCGCAGTTAATTCATGCTGC
>data set
mef2
>instances
extracted07,-31,GGGTTTAAATGGCACCCAGCAGTTGGCG
X71910,-36,GGGTTTAAATGGCACCCAGCAGTTGGTG
extracted08,-50,GGGTTTAAATGGCACCCAGCAGTTGGCG
X85744,-33,GGGTTTAAATGGCACCGAGCAGTTGGCG
>data set
mef3
>instances
X12447,-39,GCAGGAGCTGCCTTATAACC
X04260,-42,GTAGGAGCTGCCTTATAACC
>data set
mitf
>instances
X16073,-309,ACTACCTCTCATTTGCAAGGTC
D00439,-222,ACTACTTCTCATTTGCAAATTC
>data set
mtf1
>instances
X15128,-39,CGTCCAACGACTATAAAGAGGGCAGGCTGTCC
extracted10,-43,CGTCCAACGACTATAAAGAGAGCAGACTGTCC
>data set
myb
>instances
X75755,-193,GGGCGGGGCGCGCGGC
X75755,-126,GGGTGGCGCGGGCGCC
extracted17,-330,GGTGGGGCGCGCTTC
extracted17,-144,GGGAGGGGCGGGGCGCGCGGC
extracted17,-73,GGGTGGCGCGGGCGCC
>data set
myf
>instances
U18131,-182,GCTGTAATCACTTTGGGAGACTGATGCTCCATGACAGCTAGAAGTTGGATTGAGTTTCAGTAGCTACTATATATAAAGCTGGGTCGACTTAT
M84685,-92,GCTGTAATCACTTTGGGAGACTGATGCTCCATGACAGCTAGAAGTTGGATTGAGTTTCAGTAGCTACTATATATAAAGCTGGGTCGACTTAT
>data set
myod
>instances
extracted07,-31,GGGTTTAAATGGCACCCAGCAGTTGGCG
X71910,-36,GGGTTTAAATGGCACCCAGCAGTTGGTG
extracted08,-50,GGGTTTAAATGGCACCCAGCAGTTGGCG
X85744,-33,GGGTTTAAATGGCACCGAGCAGTTGGCG
>data set
mzf1
>instances
S66422,-194,CTGTTTCCTCCTCCTCCTTCTCCTCCTCCTCC
S66422,-161,TGACCTCCTCCTAC
extracted30,-204,CTGTTTCCTCCTCCTCCTTCTCCTCCTTCTCCTCCTCCTCC
extracted30,-159,TGACCTCCTTCTCCTCCCCTTTC
>data set
nf1
>instances
M26179,-234,CCCCGTGACGTCACCCGGAGCCCGGGC
X05831,-166,CCCCGTGACGTCACCCGGACTCCGGCC
>data set
nfat
>instances
extracted21,-51,ATTAATCATTTCCTC
X03020,-54,ATTAATCATTTCCTC
extracted27,-184,TTCTTCTTTACTT
extracted28,-256,TTCTTCTTTAC
X00695,-402,TTATTCTTTTCATC
X52618,-405,TTATTCTTTTCATC
AF395008,-363,TCTATCTTTCC
AF395008,-61,ACTCATTTTCCC
X05064,-364,TCTGTCTTTCC
X05064,-61,ACTCATTTTCCC
J02971,-56,ATTATTCATTTCCTC
D14461,-54,ATTATTCATTTCCTC
>data set
nfkb
>instances
extracted21,-48,AATCATTTCCTCTGTGT
X03020,-51,AATCATTTCCTCTAACT
AY008847,-239,TCCTTCCTTAT
AY008847,-216,AGTCATTTCCTCTTAGT
D63333,-404,AGTCCTTCCTTTT
D63333,-350,TCTATTCACCT
D63333,-304,TCCTTCCTTTT
D63333,-281,AGTCATTTCCTCTTA
X00695,-408,AAACATTTATTCTTTTCATCTGTTT
X00695,-198,AGGGATTTCACCT
X52618,-403,ATTCTTTTCATCTATCT
X52618,-208,AGGGATTTCACCT
>data set
nfy
>instances
M29549,-62,ATAGGTGATGAGGTTTATTTGCATATTTC
M63335,-61,ATAGGTGATGAGTCTTATTTGCATATTTC
>data set
nkx2
>instances
extracted25,-57,GGTTACTAGTTAACAGG
extracted26,-63,GGTTACTAGTTAACAGG
J02816,-62,GGTTACTAGTTAACA
AF023131,-46,GGATACCGGTTAAAAAG
AF025766,-38,GGATACCGGTTAAAAAG
>data set
nrl
>instances
extracted56,-155,TGTCACCTTGGCCCCTCT
extracted57,-164,TGTCACCTTGGCCCCTCT
extracted58,-159,TGTCACCTTGGCCCCTCT
>data set
oct
>instances
L10616,-176,ATCTTGAGTACTAGAAAGTCATGGATGA
extracted12,-161,ATCTTGAGTACTAGAAAGTGATGAATAA
>data set
olf1
>instances
extracted11,-301,GGTTGCCACAGCAATTG
extracted11,-21,GGTGGCAGCAGCACTTG
extracted22,-269,GGTTGCCACAGCAGTTG
extracted22,-33,GGTGGCAGTGGCAATCGCTGTAGCACTTG
>data set
p53
>instances
M21487,-183,CAGCCCATACAAGGCCATGGGGCTGGGC
M21390,-182,CAGCCCATACAAGGCCATGGGGCTGGGC
>data set
pou1f1
>instances
extracted13,-299,AGTATCCTACCCTTGGATTCAAAA
X12967,-328,AGTATCCTACCCCTGGATTCAAAA
X00368,-144,AATAAAATACCATTTGATGTTTGA
V01244,-418,TAATTTACCCAATAAT
V01244,-146,AATAAAATACCATTTGATGTTTAA
>data set
pou2f1
>instances
X00695,-274,GAAAAACTGTTTCATACAGAA
X00695,-86,GAAAATATGTGTAATATGTAA
X52618,-284,GAAAATTTGTTTCATACAGAA
X52618,-94,GAAAATATGTGTAATATGTAA
>data set
rar
>instances
X56849,-126,GTGAGAATCCTGGGAGTTGGTGAT
X56850,-97,GTGAGAATCCTGGGAGTTGGTGAT
X74153,-302,GGACAAATACTGAGTGTTTGTTTT
M16400,-300,GGGCAAATACTGAGTGTTTGTTTT
>data set
rfx1
>instances
J04718,-339,TCACTTTCACTTTCGTGGC
extracted42,-271,TGACTTCCACTTCCGTGGC
>data set
rxr
>instances
extracted49,-352,TTCTGTATGATCTCTGT
extracted49,-199,TACAGAATGTTATTTGT
M29301,-315,TTCTGTATGATCTCTGT
M29301,-162,TGCAGAATGTTCTTTGT
>data set
smad
>instances
AJ404961,-229,GGCGGCGAGCCCTGGGCAC
AJ404961,-73,GCCGCCGAGCGCTCGGCCC
AJ404961,-34,CGGCGAGCCCCCAGC
AF156727,-177,GGCGGCGAGCCCTGGGCAC
AF156727,-28,GCCGCCGAGCGCTCGGCCC
>data set
sp1
>instances
extracted04,-152,GGGCGGGGGC
X67686,-151,GGGCGGGGAC
X67686,-61,GGGGCGGTG
extracted05,-155,GGGCGGGGAC
extracted05,-68,GGGGCGGTG
U43589,-103,GGGGCGGGGCGGG
U43589,-22,GGGGCGGGCAG
U36238,-101,GGGGCGGG
L11910,-155,GGGCGGGG
L11910,-85,GGACGGGG
M86180,-335,GGGCGGAGAC
M86180,-85,GGACGGGG
AF004877,-305,GGGCGGGG
AF004877,-295,GGGCGGGAGG
AF004877,-278,GGGCGGAG
extracted24,-348,GGGCGGGTGG
extracted24,-331,GGGCGGAG
S54531,-50,GGGGCGGGGAC
AF221746,-406,GGGCTGGG
U32675,-450,GGCCGGGG
U32675,-101,GGGGCGGGGGCGGAGAC
U32675,-81,GGGCGGGGGCGGGCGGGGGC
L06620,-77,GGGGCGGGGGCGGAGAC
L06620,-57,GGGCGGGCGGGGGC
M13483,-419,GGGCAGGG
M26773,-454,GGGCAGGG
X15128,-395,GGGCGGAG
extracted10,-417,GGGCGGAGCC
extracted14,-441,GGGCTGGG
extracted14,-18,GGGGCGGGGAG
M13792,-199,GGGCGGGGCGGGGGC
M13792,-174,GGGCGGG
M13792,-151,GGGCGGGGCGGGAGG
extracted16,-107,GGGGCGGGGCC
extracted16,-57,GGGCGGGG
M14295,-188,GGGGCGGGAGG
M14295,-105,GGGGCGGGAAG
extracted20,-262,GGTCGGGG
extracted20,-115,GGGGCGGGAAG
X69723,-139,GGGCGGCGGCCGGGGCGGCGGC
X69723,-113,GGGCGGGCGGGGGGCAGGG
X69723,-82,GGGCGGG
extracted23,-179,GGGCAGGG
J04111,-306,GGGCGGGCCGGG
J04111,-123,GGGCGGG
X57155,-315,GGGCGGGCCGGG
X00855,-458,GGGGCGGGAAG
X00855,-128,GGGGCGGGGGGGCGGGGCC
X00855,-85,GGGGCGGGGCG
extracted35,-484,GGGGCGGAGCC
extracted35,-436,GGGGCGGGGCC
extracted35,-388,GGGGCGGAGCC
extracted35,-340,GGGGCGGGGCC
extracted35,-133,GGGCTGGG
extracted39,-457,GGGCGGTGTC
extracted40,-81,GGGCGGGGCC
extracted40,-48,GGGCGGCG
extracted45,-17,GGGCTGGG
U17193,-368,GGGGCGGTG
AB029557,-242,GGGGCGGGGGG
AB029557,-115,GGGGCGGAGGC
extracted52,-85,GGCCGGGG
M26179,-176,GGGCGGGCGGGTGG
M26179,-159,GGGGCGGGGCGGGGAC
M26179,-101,GGGGCGGGAGG
X05831,-106,GGGGCGGGGGG
X05831,-52,GGGGCGGGAAG
>data set
srf
>instances
extracted04,-101,ACACCCAAATATG
X67686,-100,ACACCCAAATATG
extracted05,-108,ACACCCAAATATG
M13631,-95,ACACCCAAATATG
M22326,-356,AGCGCCTTATATG
M26773,-243,AGCTCCCTATATG
extracted06,-121,ACAACCTTATATG
M86232,-121,ACAGCCTTATATG
M86233,-121,ACAGCCTTATATG
>data set
stat3
>instances
L05078,-305,CTGGGGCCGGGGGCGCTG
L05078,-231,CTCGGGGCGGGCCCGCGG
L05078,-210,CCCGGGGCGGTGGCGC
L05078,-179,GGGGCGGAGACGCCG
L05078,-73,CCGGGGGCGGGGCCG
L05078,-22,CTCGGTGGCGCCGCGC
X72020,-230,CACGGGGCGGGCCCGCGG
X72020,-208,CCCGGGGCGGTGGCGCGG
>data set
tbp
>instances
extracted04,-30,TATAAAA
X67686,-416,ATAAA
X67686,-31,TATAAAA
extracted05,-39,TATAAAA
M13631,-29,ATAAA
U34070,-32,GGTATAAAAG
M62362,-40,TATAAAAG
U43589,-29,TATAA
U36238,-33,TATAA
M63335,-274,ATAAA
AF004877,-33,TATAAA
extracted24,-92,TATAAA
S99616,-45,TATAAA
X04724,-24,TATAAAGG
AF188709,-467,GGTATAAAGGTATAAA
AF188709,-444,TATAAATG
AF188709,-342,ATAAA
AF188709,-27,TATAAAAG
AF249274,-335,ATAAA
AF249274,-27,TATAAAAG
S54531,-165,TATAAA
S54531,-15,TATAAA
extracted01,-64,TATAAA
U68061,-201,ATAAA
U68061,-57,TATAA
AF221746,-204,TATAAA
AF221746,-197,ATAAA
AF221746,-58,TATAA
M13483,-31,TATAAA
M26773,-33,GCTATAAA
extracted50,-429,TATAA
extracted50,-235,ATAAA
extracted50,-31,TATAAAAG
extracted51,-424,TATAA
extracted51,-49,GCTATAAAA
Y00474,-29,TATAAAA
V01217,-32,TATAAAA
X00182,-27,TATAAAA
Z18892,-386,ATAAA
U18131,-111,TATAAA
M84685,-21,TATAAA
X00371,-35,GGTATAAAA
extracted09,-459,ATAAA
extracted09,-89,GGTATAAAAG
X15128,-442,TATAAAA
X15128,-28,TATAAA
extracted10,-465,TATAAAA
extracted10,-32,TATAAA
extracted13,-84,ATAAA
extracted13,-32,GGTATAAAA
X12967,-243,ATAAA
X12967,-110,ATAAA
X12967,-58,GGTATAAAA
U36308,-31,TATAAAGG
extracted15,-31,TATAAAGG
X75755,-96,GATATAAACG
extracted17,-43,GGTATAAATG
extracted25,-209,ATAAA
extracted25,-152,ATAAA
extracted25,-83,ATAAA
extracted25,-24,TATAAAAG
extracted26,-485,ATAAAATAAA
extracted26,-32,GATATAAAAG
J02816,-277,ATAAATAAA
J02816,-31,GATATAAAAG
M67446,-29,ATAAA
extracted38,-80,ATAAA
AJ250902,-117,ATAAA
AJ250902,-31,TATAA
U00938,-110,ATAAA
U00938,-28,TATAA
X00695,-471,ATAAA
X00695,-24,TATAAA
X52618,-32,TATAAA
J02971,-326,ATAAA
J02971,-150,ATAAA
J02971,-125,TATAA
J02971,-30,ATAAA
D14461,-374,ATAAA
D14461,-30,ATAAA
X13323,-33,GGTATAAAAG
M33961,-31,GGTATAAAGG
AF044316,-47,TATAAA
AF044315,-294,ATAAA
AF044315,-52,GATATAAA
U60669,-30,ATAAA
L04608,-30,ATAAA
X13257,-29,ATAAA
extracted45,-32,ATAAA
AB004306,-10,GGTATAAA
J04500,-30,GATATAAAAG
M32656,-331,ATAAA
M32656,-256,ATAAA
M32656,-33,ATAAATAAA
M18472,-210,ATAAA
M18472,-182,ATAAA
M18472,-91,ATAAA
X57138,-34,GCTATAAAA
D43966,-447,ATAAA
D43966,-29,TATAA
X73536,-55,TATAAAAG
M84340,-32,TATAAAAG
AF377331,-442,ATAAA
AF377331,-32,TATAAAAG
L13028,-220,ATAAA
L13028,-176,ATAAA
L13028,-30,TATAAAAG
X56849,-449,TATAA
X56849,-326,ATAAA
X56850,-461,ATAAA
X74153,-466,TATAA
X74153,-36,GCTATAAAAG
M16400,-463,TATAA
M16400,-32,GCTATAAAAG
extracted49,-65,TATAAA
M29301,-452,TATAAA
M29301,-27,TATAAA
U81851,-417,TATAA
U81851,-28,TATAAA
M63800,-367,GTTATAAAA
M63800,-28,TATAAA
X00368,-349,TATAA
X00368,-311,ATAAA
X00368,-143,ATAAA
X00368,-28,TATAAA
V01244,-145,ATAAA
V01244,-30,TATAAA
M26179,-439,ATAAA
M26179,-81,TATAA
X05831,-30,TATAA
extracted56,-343,ATAAA
extracted56,-27,TATAA
extracted57,-47,TATAA
extracted58,-42,TATAA
>data set
tef1
>instances
extracted04,-120,GAGGGGGCTCTAGTGCCCAACACCC
X67686,-190,GGGCCAGTCCTCTCCTTC
X67686,-119,GAAGGGACTCTAGTGCCCGACACCC
extracted05,-194,GGGCCAGTTCTCTCCTTC
extracted05,-127,GAAGGGACTCTAGTGCCCAACACCC
Z20656,-159,GGGGCCCTGCTGTCCTCCTGTC
M62404,-284,GAGACGCTCCTGTCTCTC
M62404,-159,GGGGCCCTGCTGTCCTCCTGTC
extracted13,-355,GGAGAGGCTCTGTTGCCCCTCATCC
X12967,-381,GGAGAGGCTCTGTTGCCCCTCGTCC
>data set
usf
>instances
extracted56,-36,AGGTCACTTTATAAGGGTCTGGGGGGG
extracted57,-56,AGGTCACTTTATAAGGGTCTGGGGGGG
extracted58,-51,AGGTCACTTTATAAGGGTCTGGGGGGG
>data set
vdr
>instances
U60669,-161,CTCACCTCGCTGACTCCATCCTCCTTCCAC
L04608,-143,CTCACCTCGCTGACTCCATCCTCTTCCCAC